Click here to switch to the map view.

The map label for this gene is ycbN [H]

Identifier: 50843641

GI number: 50843641

Start: 2389175

End: 2389531

Strand: Direct

Name: ycbN [H]

Synonym: PPA2206

Alternate gene names: 50843641

Gene position: 2389175-2389531 (Clockwise)

Preceding gene: 50843640

Following gene: 50843642

Centisome position: 93.32

GC content: 55.18

Gene sequence:

>357_bases
GTGCCCCACCCCCAAGTACAGAGAGATCAACACATGGTCGACCACGTGGTTGATGTCCACGACATCACCGTCACTATCAA
AGGCAGAACAATTCTGTCGAATTTGAGCATCCAGGTTGAGGAGGGAACGTTCCACGGAATCATCGGACCCAACGGAGCCG
GCAAGACGACCCTGTTCAACGCCATACAGGGATTCCGTAAACCCGCTCAAGGATCAATCGAACTCTTAGGTCACTCCCCG
TACCCACGCAATCTTGACCTGCTGACGCAGATTGGTATTCAACCACAACGACCGGCCTTTTCCCTCACACCACCCTGCGC
GAACACCTCTGCGCCGTCGCCGACATCTACGCAGTAG

Upstream 100 bases:

>100_bases
ACTCGAATTTCAGCCTAGTCCGACATGCAGCTGAGCCCCCTTCGCTCTCGGATCATTCCCGTAGCGAACCACTCCATTGA
TGGTGTGGGGTGCCCACCTG

Downstream 100 bases:

>100_bases
CTGCGTCGAGGGTTGACGACCTCATTGAGGCCCTCGGTCTGAGTCATGCCTCCCGTACGCGTGTCGAGAAACTGTCGGGA
GGAGAGCGTCAACGACTGGC

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MPHPQVQRDQHMVDHVVDVHDITVTIKGRTILSNLSIQVEEGTFHGIIGPNGAGKTTLFNAIQGFRKPAQGSIELLGHSP
YPRNLDLLTQIGIQPQRPAFSLTPPCANTSAPSPTSTQ

Sequences:

>Translated_118_residues
MPHPQVQRDQHMVDHVVDVHDITVTIKGRTILSNLSIQVEEGTFHGIIGPNGAGKTTLFNAIQGFRKPAQGSIELLGHSP
YPRNLDLLTQIGIQPQRPAFSLTPPCANTSAPSPTSTQ
>Mature_117_residues
PHPQVQRDQHMVDHVVDVHDITVTIKGRTILSNLSIQVEEGTFHGIIGPNGAGKTTLFNAIQGFRKPAQGSIELLGHSPY
PRNLDLLTQIGIQPQRPAFSLTPPCANTSAPSPTSTQ

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 12754; Mature: 12622

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHPQVQRDQHMVDHVVDVHDITVTIKGRTILSNLSIQVEEGTFHGIIGPNGAGKTTLFN
CCCCCCCCHHHHHHHHCCEEEEEEEECCCEEECCCEEEEECCEEEEEECCCCCCHHHHHH
AIQGFRKPAQGSIELLGHSPYPRNLDLLTQIGIQPQRPAFSLTPPCANTSAPSPTSTQ
HHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PHPQVQRDQHMVDHVVDVHDITVTIKGRTILSNLSIQVEEGTFHGIIGPNGAGKTTLFN
CCCCCCCHHHHHHHHCCEEEEEEEECCCEEECCCEEEEECCEEEEEECCCCCCHHHHHH
AIQGFRKPAQGSIELLGHSPYPRNLDLLTQIGIQPQRPAFSLTPPCANTSAPSPTSTQ
HHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 7704254 [H]