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The map label for this gene is 50843462

Identifier: 50843462

GI number: 50843462

Start: 2187940

End: 2188743

Strand: Reverse

Name: 50843462

Synonym: PPA2016

Alternate gene names: NA

Gene position: 2188743-2187940 (Counterclockwise)

Preceding gene: 50843463

Following gene: 50843461

Centisome position: 85.49

GC content: 63.43

Gene sequence:

>804_bases
ATGAGCCGACTTCTGCCCGACCCGGACGTGGCGGGAGCGTGGATGGTGCGCGTCGGTGACGCGGATCAGTCGTGGATCGA
TCCCGACGATCCCACCCGTCTGGAGTTCGACTATATGCAACGCATCGCCGATCATCTCGATGTTCACCGTCCAGCGGGGG
AGAGGATGCGCGTCATCCATCTCGGTGGGGCAGGGATGTGCCTCGCGCGGTATGTCGCGGCGACCCGTCCGACCAGCCCG
CAGATCGTCTGTGAGCCCGACGCCGAGTTGACGGCTGAGGTCCGTCTCAAGGCTCCGCTACCGGTGCGTTCAGGGATCAA
GGTGCGTCCGGTAGACGGACGATCGGGGGTCGCGGCCATGCGGGAGGATTTCGCTGACGTCGTCATCCTCGATGCCTTCG
ACGGCGCTCGGGTTCCTGGCGACCTCGTCACTGTCGAGTTCTTTGCCGATGTATCCCGCATCCTGCACTCCGACGGTATC
GGGGTAGCGAACTTAGCTGACTCCGCACCCCTTGTGTGGACTAAGCGAGTCGTGAGGTCCGTTAAAGAAGTGTTTTCCAA
CGTCTGTATGGCGGCGGAGCCAGCGACCCTCAAGGGGCGTCGCTACGGAAATATTGTCCTGGCCGCCTCGAACGGACCGC
TGCACGAGGAGGACCTGACTCGACGCTGTAGCGGCGCGGCTGTCCCGTTCCGGTTTATCGCTGGTGATGCACTGGCGAAG
CTGTTGGCAGATGCTCGTCCTTTCCACGATGGCGACACCGAATCCTCGCCGGGGCCGCCTGGCGGAGCGACCTTCTTCTC
CTGA

Upstream 100 bases:

>100_bases
CCACTAAGCGTGGTGGCCAGGAGGACACTGCGATCTCGAGGTGGATGGCCGATAATTCGGACTGGGTGCACGATTGGCTG
GCCGGAAGGCTGGGGTCTCG

Downstream 100 bases:

>100_bases
GTGCTCATCTGGTCAGCGGTGTTGTCCTGGGTAGCGACCTGGTGAGACATCGCGGCGATGACGGTTCTCGTTCGGGTTGT
CGCTAAGTGACATGATGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Spermidine Synthase-Like Protein; Spermine Synthase; Methyltransferase Type; Transferase; Sam Dependent Methyltransferase

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSRLLPDPDVAGAWMVRVGDADQSWIDPDDPTRLEFDYMQRIADHLDVHRPAGERMRVIHLGGAGMCLARYVAATRPTSP
QIVCEPDAELTAEVRLKAPLPVRSGIKVRPVDGRSGVAAMREDFADVVILDAFDGARVPGDLVTVEFFADVSRILHSDGI
GVANLADSAPLVWTKRVVRSVKEVFSNVCMAAEPATLKGRRYGNIVLAASNGPLHEEDLTRRCSGAAVPFRFIAGDALAK
LLADARPFHDGDTESSPGPPGGATFFS

Sequences:

>Translated_267_residues
MSRLLPDPDVAGAWMVRVGDADQSWIDPDDPTRLEFDYMQRIADHLDVHRPAGERMRVIHLGGAGMCLARYVAATRPTSP
QIVCEPDAELTAEVRLKAPLPVRSGIKVRPVDGRSGVAAMREDFADVVILDAFDGARVPGDLVTVEFFADVSRILHSDGI
GVANLADSAPLVWTKRVVRSVKEVFSNVCMAAEPATLKGRRYGNIVLAASNGPLHEEDLTRRCSGAAVPFRFIAGDALAK
LLADARPFHDGDTESSPGPPGGATFFS
>Mature_266_residues
SRLLPDPDVAGAWMVRVGDADQSWIDPDDPTRLEFDYMQRIADHLDVHRPAGERMRVIHLGGAGMCLARYVAATRPTSPQ
IVCEPDAELTAEVRLKAPLPVRSGIKVRPVDGRSGVAAMREDFADVVILDAFDGARVPGDLVTVEFFADVSRILHSDGIG
VANLADSAPLVWTKRVVRSVKEVFSNVCMAAEPATLKGRRYGNIVLAASNGPLHEEDLTRRCSGAAVPFRFIAGDALAKL
LADARPFHDGDTESSPGPPGGATFFS

Specific function: Unknown

COG id: COG0421

COG function: function code E; Spermidine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28740; Mature: 28609

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLLPDPDVAGAWMVRVGDADQSWIDPDDPTRLEFDYMQRIADHLDVHRPAGERMRVIH
CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCEEEEE
LGGAGMCLARYVAATRPTSPQIVCEPDAELTAEVRLKAPLPVRSGIKVRPVDGRSGVAAM
ECCCHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCCCHHHH
REDFADVVILDAFDGARVPGDLVTVEFFADVSRILHSDGIGVANLADSAPLVWTKRVVRS
HHCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHH
VKEVFSNVCMAAEPATLKGRRYGNIVLAASNGPLHEEDLTRRCSGAAVPFRFIAGDALAK
HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
LLADARPFHDGDTESSPGPPGGATFFS
HHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRLLPDPDVAGAWMVRVGDADQSWIDPDDPTRLEFDYMQRIADHLDVHRPAGERMRVIH
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCEEEEE
LGGAGMCLARYVAATRPTSPQIVCEPDAELTAEVRLKAPLPVRSGIKVRPVDGRSGVAAM
ECCCHHHHHHHHHHCCCCCCCEEECCCCCCEEEEEEECCCCCCCCCEEEECCCCCCHHHH
REDFADVVILDAFDGARVPGDLVTVEFFADVSRILHSDGIGVANLADSAPLVWTKRVVRS
HHCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHH
VKEVFSNVCMAAEPATLKGRRYGNIVLAASNGPLHEEDLTRRCSGAAVPFRFIAGDALAK
HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
LLADARPFHDGDTESSPGPPGGATFFS
HHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA