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The map label for this gene is araN [H]

Identifier: 50843409

GI number: 50843409

Start: 2123055

End: 2124377

Strand: Direct

Name: araN [H]

Synonym: PPA1961

Alternate gene names: 50843409

Gene position: 2123055-2124377 (Clockwise)

Preceding gene: 50843408

Following gene: 50843410

Centisome position: 82.92

GC content: 57.9

Gene sequence:

>1323_bases
ATGGCAAACTTGCACAGTTTCAGTCGCCGTGGACTGTTGCTCGGAGGCGGTGTCGCTATGACGACCATGGCTCTAGCAGC
ATGTGGCGAATCCAAGAGTGCATCCAGCAGCAGTACGAGCAGCGGCGCCTCGGACGCGAAGGTTTCGTTGACCTTTTGGG
GGTGGGCCCCCGGATACAAGGAGGCCGTCGAGCTGTGGAATAAGAAAAACCCGAACACTCAGGTCACGTGGATCGCCACC
GAAGCCAGTCGCAAGATTTACCCGAAGATGCTCACGGCGGTCAAAGCCAACAACGCTCCCGACCTCGCTCAGGTAGGTTA
CGAGGCGCTGCCCTCCTTTGTGATCCAAGATGCGGTTCAAGACATCAAGGAATGGGCTGGTGACGTCGACAAGAATTTCA
CCGCAGCTGGTGCTAAGTCCGTCAATCTCGGCGGTGCCGTCTACGGAATCCCAGTGGATACTGCGCCAATGGCCATGATC
TACAACAAAGCCTTATTGGACTCGTTGAAAATCAAGGCGCCCAAGACCTGGGACGAGTTCGCCAGCGCAGCTCGGGCTGT
CAAGAAAGCCGACCCGAAGGCCTCGTTGACCTACTTCAGCTCCGACCCGAACTTCCTGGCTGGTTTGGTCCGGCAAGCAG
GCGGACGCTGGTACGACGTCACTGATTCCACCGTAAAGGTCATCATGACTCAGGACGCCGCCTCGAGGAAGGTGGCTGAC
TTCTGGCAAAAACTCATCAACGAAGGCAGCATTCCCGTCCACGAGGGCTACACCCCGCAGGTGTACAAACAGATGAATGA
GGACACCCTTACTTCGGAACTCTACGGCATCTGGGACACTGCACTCATCGCCCAGAACGTGCCCAAGGGGAAAGGCAAGT
GGGCCGTTGCTCCGCTGCCAGAATGGCCGGACCGTCCCGGTGGAGCCGACATGGGAGGGTCAGCCACAGTGGTGCTCAAG
GGTTCAAAGAACGCAGAAGCGGCCGCTAGGTTCGCCACGTGGATGAGCACTGACCCGCAGGCCGTGTCGATCTTGATTTC
GAAGGGTGGCCTGTGGCCGGCCTCAACCACGGGGCTGGCGAATAAGGCCCTGCAGAAACCTGACGCCTTCTACAGCAACG
ACAAGGTTTTCGTCCCCTTCATCGACGTGGCGAAGAACCTCAAATACGACTGGGTTTGGGGACCCACCCAGGTTCAAGCT
GGGCAAGACATGGAGAACAACTTGGTCAAGGTCTCAAAGTCGTACCCCATTACCAAGGCACTGGCTGACACCCAGGAGTC
AACCTTGGCCAAGCTGAAGAAGCAGGGCATCAAGGTCGGCTGA

Upstream 100 bases:

>100_bases
GCCTTTTTGTCAGTGCTGCCACTTGTGGCCCTCTTCCTTCTATTGCAGCGCTACTGGAAGACCGGTCTAACGACCGGCGG
AATCAAGTAAGGAACAAAAC

Downstream 100 bases:

>100_bases
CGCTCGACGACACCTGACCGACTGCAGTCGGGAACCGAATCACCAGTGCGGATGAATCCACACTGGTGATAGGTACGTTA
CGCGAGAATGTCATCGAAGA

Product: sugar-binding periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MANLHSFSRRGLLLGGGVAMTTMALAACGESKSASSSSTSSGASDAKVSLTFWGWAPGYKEAVELWNKKNPNTQVTWIAT
EASRKIYPKMLTAVKANNAPDLAQVGYEALPSFVIQDAVQDIKEWAGDVDKNFTAAGAKSVNLGGAVYGIPVDTAPMAMI
YNKALLDSLKIKAPKTWDEFASAARAVKKADPKASLTYFSSDPNFLAGLVRQAGGRWYDVTDSTVKVIMTQDAASRKVAD
FWQKLINEGSIPVHEGYTPQVYKQMNEDTLTSELYGIWDTALIAQNVPKGKGKWAVAPLPEWPDRPGGADMGGSATVVLK
GSKNAEAAARFATWMSTDPQAVSILISKGGLWPASTTGLANKALQKPDAFYSNDKVFVPFIDVAKNLKYDWVWGPTQVQA
GQDMENNLVKVSKSYPITKALADTQESTLAKLKKQGIKVG

Sequences:

>Translated_440_residues
MANLHSFSRRGLLLGGGVAMTTMALAACGESKSASSSSTSSGASDAKVSLTFWGWAPGYKEAVELWNKKNPNTQVTWIAT
EASRKIYPKMLTAVKANNAPDLAQVGYEALPSFVIQDAVQDIKEWAGDVDKNFTAAGAKSVNLGGAVYGIPVDTAPMAMI
YNKALLDSLKIKAPKTWDEFASAARAVKKADPKASLTYFSSDPNFLAGLVRQAGGRWYDVTDSTVKVIMTQDAASRKVAD
FWQKLINEGSIPVHEGYTPQVYKQMNEDTLTSELYGIWDTALIAQNVPKGKGKWAVAPLPEWPDRPGGADMGGSATVVLK
GSKNAEAAARFATWMSTDPQAVSILISKGGLWPASTTGLANKALQKPDAFYSNDKVFVPFIDVAKNLKYDWVWGPTQVQA
GQDMENNLVKVSKSYPITKALADTQESTLAKLKKQGIKVG
>Mature_439_residues
ANLHSFSRRGLLLGGGVAMTTMALAACGESKSASSSSTSSGASDAKVSLTFWGWAPGYKEAVELWNKKNPNTQVTWIATE
ASRKIYPKMLTAVKANNAPDLAQVGYEALPSFVIQDAVQDIKEWAGDVDKNFTAAGAKSVNLGGAVYGIPVDTAPMAMIY
NKALLDSLKIKAPKTWDEFASAARAVKKADPKASLTYFSSDPNFLAGLVRQAGGRWYDVTDSTVKVIMTQDAASRKVADF
WQKLINEGSIPVHEGYTPQVYKQMNEDTLTSELYGIWDTALIAQNVPKGKGKWAVAPLPEWPDRPGGADMGGSATVVLKG
SKNAEAAARFATWMSTDPQAVSILISKGGLWPASTTGLANKALQKPDAFYSNDKVFVPFIDVAKNLKYDWVWGPTQVQAG
QDMENNLVKVSKSYPITKALADTQESTLAKLKKQGIKVG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47302; Mature: 47171

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLHSFSRRGLLLGGGVAMTTMALAACGESKSASSSSTSSGASDAKVSLTFWGWAPGYK
CCCCCCHHHCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH
EAVELWNKKNPNTQVTWIATEASRKIYPKMLTAVKANNAPDLAQVGYEALPSFVIQDAVQ
HHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
DIKEWAGDVDKNFTAAGAKSVNLGGAVYGIPVDTAPMAMIYNKALLDSLKIKAPKTWDEF
HHHHHHCCCCCCCCCCCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
ASAARAVKKADPKASLTYFSSDPNFLAGLVRQAGGRWYDVTDSTVKVIMTQDAASRKVAD
HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCEEEEEEECCHHHHHHHH
FWQKLINEGSIPVHEGYTPQVYKQMNEDTLTSELYGIWDTALIAQNVPKGKGKWAVAPLP
HHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
EWPDRPGGADMGGSATVVLKGSKNAEAAARFATWMSTDPQAVSILISKGGLWPASTTGLA
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHH
NKALQKPDAFYSNDKVFVPFIDVAKNLKYDWVWGPTQVQAGQDMENNLVKVSKSYPITKA
HHHHCCCCCCCCCCEEEEEHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHH
LADTQESTLAKLKKQGIKVG
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ANLHSFSRRGLLLGGGVAMTTMALAACGESKSASSSSTSSGASDAKVSLTFWGWAPGYK
CCCCCHHHCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH
EAVELWNKKNPNTQVTWIATEASRKIYPKMLTAVKANNAPDLAQVGYEALPSFVIQDAVQ
HHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
DIKEWAGDVDKNFTAAGAKSVNLGGAVYGIPVDTAPMAMIYNKALLDSLKIKAPKTWDEF
HHHHHHCCCCCCCCCCCCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHH
ASAARAVKKADPKASLTYFSSDPNFLAGLVRQAGGRWYDVTDSTVKVIMTQDAASRKVAD
HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCEEEEEEECCHHHHHHHH
FWQKLINEGSIPVHEGYTPQVYKQMNEDTLTSELYGIWDTALIAQNVPKGKGKWAVAPLP
HHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
EWPDRPGGADMGGSATVVLKGSKNAEAAARFATWMSTDPQAVSILISKGGLWPASTTGLA
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHH
NKALQKPDAFYSNDKVFVPFIDVAKNLKYDWVWGPTQVQAGQDMENNLVKVSKSYPITKA
HHHHCCCCCCCCCCEEEEEHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHH
LADTQESTLAKLKKQGIKVG
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]