Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 50843408

GI number: 50843408

Start: 2122118

End: 2123044

Strand: Direct

Name: araQ [H]

Synonym: PPA1960

Alternate gene names: 50843408

Gene position: 2122118-2123044 (Clockwise)

Preceding gene: 50843407

Following gene: 50843409

Centisome position: 82.89

GC content: 57.61

Gene sequence:

>927_bases
ATGAGTGAGCAGAACCTCATGGAGTCGACGGACCACGGCACCACAGGTGTCGTGCCACCGGTCAAGCGCAACCGCGGCAA
GGGAGGCAAACCACAGTTCGGCCTCACCGGAGCCTCGATGCTGGTCGTCATGATCATCGCTGCGCTGTATTTTCTTGCCC
CGCTGTGGTGGTTTCTCGTCTCGGCCACGAAAAGCAACGGTGGGCTGTACTCGGGTAATCCATTCTGGTTCCATGACTTC
AGTCTTGCGGAAAATTTCACCGACATCGTCCACCGCGACGGAGGCATCTACTTCCGCTGGCTGCGAAACTCCATCTTCTA
CTCGCTAGTTGCCGGGGTGGGTGCCGGACTGATCTCGGCCATGGCCGGGTACGCGCTGGCCAAGTTCCGGTTCCGTGGGC
GAGATGCGGTGTTTAACTGTGTGCTGGCGGCGACCCTGTTGCCGATCATGCTGCTGACCGTCCCATTATATCTCATGTTC
TCAAAGGTCGGTCTGGTGGACACAATCTGGGCGATGATCCTGCCTAGTCTCATCAACCCTTTCGGCATTTACCTGTGCCG
TGTGTACTCGGCAACCGTACCCACCGAGGTGCTCGAAGCAGCTCGTCTGGACGGCACGAGTGAAGCCGGCATTTTCTTCA
AGATCGTGCTGCGCATCATCTCCCCCGCACTGGCCACGGTGTTCCTTATCCAGTTCGTGAGCACCTGGGCCAATTTCCTA
TTGCCAACAATGATGTTGACCACGCCCGAGAAACAGCCGTTAGCCGTCGGACTCGTCACGTGGCAAGCGACCATTCAGAC
GGGCAACCCGGCACCTACCAACATTCTCATCTTCGGGGCCTTTTTGTCAGTGCTGCCACTTGTGGCCCTCTTCCTTCTAT
TGCAGCGCTACTGGAAGACCGGTCTAACGACCGGCGGAATCAAGTAA

Upstream 100 bases:

>100_bases
TACTTCGGTGCTGCTGCTCGCAGCGTCATTCTTGCCGTCATCACCCTGGTGGCCTCGTTCGGATTCCTGAAGTTACAGTC
ACGCCGCGGAGGTGCCTTCG

Downstream 100 bases:

>100_bases
GGAACAAAACATGGCAAACTTGCACAGTTTCAGTCGCCGTGGACTGTTGCTCGGAGGCGGTGTCGCTATGACGACCATGG
CTCTAGCAGCATGTGGCGAA

Product: binding-protein-dependent transport permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSEQNLMESTDHGTTGVVPPVKRNRGKGGKPQFGLTGASMLVVMIIAALYFLAPLWWFLVSATKSNGGLYSGNPFWFHDF
SLAENFTDIVHRDGGIYFRWLRNSIFYSLVAGVGAGLISAMAGYALAKFRFRGRDAVFNCVLAATLLPIMLLTVPLYLMF
SKVGLVDTIWAMILPSLINPFGIYLCRVYSATVPTEVLEAARLDGTSEAGIFFKIVLRIISPALATVFLIQFVSTWANFL
LPTMMLTTPEKQPLAVGLVTWQATIQTGNPAPTNILIFGAFLSVLPLVALFLLLQRYWKTGLTTGGIK

Sequences:

>Translated_308_residues
MSEQNLMESTDHGTTGVVPPVKRNRGKGGKPQFGLTGASMLVVMIIAALYFLAPLWWFLVSATKSNGGLYSGNPFWFHDF
SLAENFTDIVHRDGGIYFRWLRNSIFYSLVAGVGAGLISAMAGYALAKFRFRGRDAVFNCVLAATLLPIMLLTVPLYLMF
SKVGLVDTIWAMILPSLINPFGIYLCRVYSATVPTEVLEAARLDGTSEAGIFFKIVLRIISPALATVFLIQFVSTWANFL
LPTMMLTTPEKQPLAVGLVTWQATIQTGNPAPTNILIFGAFLSVLPLVALFLLLQRYWKTGLTTGGIK
>Mature_307_residues
SEQNLMESTDHGTTGVVPPVKRNRGKGGKPQFGLTGASMLVVMIIAALYFLAPLWWFLVSATKSNGGLYSGNPFWFHDFS
LAENFTDIVHRDGGIYFRWLRNSIFYSLVAGVGAGLISAMAGYALAKFRFRGRDAVFNCVLAATLLPIMLLTVPLYLMFS
KVGLVDTIWAMILPSLINPFGIYLCRVYSATVPTEVLEAARLDGTSEAGIFFKIVLRIISPALATVFLIQFVSTWANFLL
PTMMLTTPEKQPLAVGLVTWQATIQTGNPAPTNILIFGAFLSVLPLVALFLLLQRYWKTGLTTGGIK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=230, Percent_Identity=28.695652173913, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789860, Length=279, Percent_Identity=25.4480286738351, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790464, Length=261, Percent_Identity=27.5862068965517, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33758; Mature: 33627

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQNLMESTDHGTTGVVPPVKRNRGKGGKPQFGLTGASMLVVMIIAALYFLAPLWWFLV
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SATKSNGGLYSGNPFWFHDFSLAENFTDIVHRDGGIYFRWLRNSIFYSLVAGVGAGLISA
HHHCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MAGYALAKFRFRGRDAVFNCVLAATLLPIMLLTVPLYLMFSKVGLVDTIWAMILPSLINP
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGIYLCRVYSATVPTEVLEAARLDGTSEAGIFFKIVLRIISPALATVFLIQFVSTWANFL
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPTMMLTTPEKQPLAVGLVTWQATIQTGNPAPTNILIFGAFLSVLPLVALFLLLQRYWKT
HHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLTTGGIK
CCCCCCCC
>Mature Secondary Structure 
SEQNLMESTDHGTTGVVPPVKRNRGKGGKPQFGLTGASMLVVMIIAALYFLAPLWWFLV
CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SATKSNGGLYSGNPFWFHDFSLAENFTDIVHRDGGIYFRWLRNSIFYSLVAGVGAGLISA
HHHCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MAGYALAKFRFRGRDAVFNCVLAATLLPIMLLTVPLYLMFSKVGLVDTIWAMILPSLINP
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGIYLCRVYSATVPTEVLEAARLDGTSEAGIFFKIVLRIISPALATVFLIQFVSTWANFL
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPTMMLTTPEKQPLAVGLVTWQATIQTGNPAPTNILIFGAFLSVLPLVALFLLLQRYWKT
HHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLTTGGIK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]