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The map label for this gene is ugpQ [H]

Identifier: 50843295

GI number: 50843295

Start: 2003665

End: 2004411

Strand: Reverse

Name: ugpQ [H]

Synonym: PPA1839

Alternate gene names: 50843295

Gene position: 2004411-2003665 (Counterclockwise)

Preceding gene: 50843296

Following gene: 50843294

Centisome position: 78.29

GC content: 53.95

Gene sequence:

>747_bases
ATGTCTACTCAACGAGTTATTGCGCACCGAGGATTGAGTTCTCGTGCGCCTGAGAATACGATGTCAGCTTTCCGAGCCGC
TGTGGAAGCTGGTATCAAGTGGATCGAGACCGATGTTGATATCATTGGTGACGGTACCGCGGTACTCATCCACGATAGCT
CCTTGGATCGAACCACGAATTGCCGCGGTCGTTATAATGAGTTGACCGCCTCGGATCTACCTGCCATTGACGCTGGCAGA
TGGTTTTCGCCCCAGTTCATCGGGGAGCCGCTGCCGCGGTTAGCGGACCTTATCGACTTCATGAATGAGACTGGTGTCAA
CGCCAATATTGAAATCAAGTCGAACGAGGAGGGAGCTCGCAGTTCGCTTCAGTTACGCGATTCCGTGATCGCAGAGCTTG
AAAGACTCAAGCCTGGACGTCAGGTGATTGTGAGCTCGTTCAACCATGTGCTGTTATCCAAGTTCAAGGAAGCGGCTCCG
CAATGGGACGTGGCATGTCTGTATGAGACGGCGGCGCTCTATGACGATTGGCGTTCCATGCTGGAGCTTGTGGGAGCCAC
TTACATCCACCCTGAGGATTCTGCACTTACCGAGCGGAGTGTTGTGCAGTTCAAGGAAGCTGGTTTTCGAGTCAATGCGT
GGACGGTCAACCGGGCTGATCGTGCGAACCAATTGTTCAATTGGGGAGTCGATGGAGTGATATCCGACGTCCCAGATCTG
CTGGCCGGCACTGTCGCGGCACACTAA

Upstream 100 bases:

>100_bases
AACCGTGCTGGGAATGTTTTCCCGGCATGGTGTTTCGCAAGGTTCTGCTACAGTTGTGCCGCCGACGTTGGCACAACTGT
TATACGCAAGGAAATCTTGT

Downstream 100 bases:

>100_bases
AAAGTGGAAAACCATGGAGACAACTGTTCTCTTAGCTGACCCGAGCGTATCTGAATCGGGAAAAAATAGCCGGCTCCCAG
TGTTTTTGCGAGGCGCGAGG

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSTQRVIAHRGLSSRAPENTMSAFRAAVEAGIKWIETDVDIIGDGTAVLIHDSSLDRTTNCRGRYNELTASDLPAIDAGR
WFSPQFIGEPLPRLADLIDFMNETGVNANIEIKSNEEGARSSLQLRDSVIAELERLKPGRQVIVSSFNHVLLSKFKEAAP
QWDVACLYETAALYDDWRSMLELVGATYIHPEDSALTERSVVQFKEAGFRVNAWTVNRADRANQLFNWGVDGVISDVPDL
LAGTVAAH

Sequences:

>Translated_248_residues
MSTQRVIAHRGLSSRAPENTMSAFRAAVEAGIKWIETDVDIIGDGTAVLIHDSSLDRTTNCRGRYNELTASDLPAIDAGR
WFSPQFIGEPLPRLADLIDFMNETGVNANIEIKSNEEGARSSLQLRDSVIAELERLKPGRQVIVSSFNHVLLSKFKEAAP
QWDVACLYETAALYDDWRSMLELVGATYIHPEDSALTERSVVQFKEAGFRVNAWTVNRADRANQLFNWGVDGVISDVPDL
LAGTVAAH
>Mature_247_residues
STQRVIAHRGLSSRAPENTMSAFRAAVEAGIKWIETDVDIIGDGTAVLIHDSSLDRTTNCRGRYNELTASDLPAIDAGRW
FSPQFIGEPLPRLADLIDFMNETGVNANIEIKSNEEGARSSLQLRDSVIAELERLKPGRQVIVSSFNHVLLSKFKEAAPQ
WDVACLYETAALYDDWRSMLELVGATYIHPEDSALTERSVVQFKEAGFRVNAWTVNRADRANQLFNWGVDGVISDVPDLL
AGTVAAH

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=238, Percent_Identity=25.6302521008403, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1789858, Length=244, Percent_Identity=35.655737704918, Blast_Score=146, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17561436, Length=244, Percent_Identity=26.6393442622951, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17542344, Length=276, Percent_Identity=23.1884057971014, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27402; Mature: 27271

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQRVIAHRGLSSRAPENTMSAFRAAVEAGIKWIETDVDIIGDGTAVLIHDSSLDRTTN
CCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHEECCCEEECCCCEEEEECCCCCCCCC
CRGRYNELTASDLPAIDAGRWFSPQFIGEPLPRLADLIDFMNETGVNANIEIKSNEEGAR
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
SSLQLRDSVIAELERLKPGRQVIVSSFNHVLLSKFKEAAPQWDVACLYETAALYDDWRSM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LELVGATYIHPEDSALTERSVVQFKEAGFRVNAWTVNRADRANQLFNWGVDGVISDVPDL
HHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHH
LAGTVAAH
HHHHHHCC
>Mature Secondary Structure 
STQRVIAHRGLSSRAPENTMSAFRAAVEAGIKWIETDVDIIGDGTAVLIHDSSLDRTTN
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHEECCCEEECCCCEEEEECCCCCCCCC
CRGRYNELTASDLPAIDAGRWFSPQFIGEPLPRLADLIDFMNETGVNANIEIKSNEEGAR
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
SSLQLRDSVIAELERLKPGRQVIVSSFNHVLLSKFKEAAPQWDVACLYETAALYDDWRSM
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LELVGATYIHPEDSALTERSVVQFKEAGFRVNAWTVNRADRANQLFNWGVDGVISDVPDL
HHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHH
LAGTVAAH
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]