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The map label for this gene is secY

Identifier: 50843291

GI number: 50843291

Start: 2000110

End: 2001429

Strand: Reverse

Name: secY

Synonym: PPA1835

Alternate gene names: 50843291

Gene position: 2001429-2000110 (Counterclockwise)

Preceding gene: 50843293

Following gene: 50843290

Centisome position: 78.17

GC content: 56.29

Gene sequence:

>1320_bases
ATGCTTTCCGCCTTCGCCAATGCGTTCCGAACACCGGATCTTCGCCGCAAGATCCTGTTCACGTTGTTCATCCTGGCGGT
GTTCCGGCTCGGGTCTGTCATCCCCGTTCCGAACGTCAATGTGACGAACATCAACACCTGTGTCACCCAGGCGAGCTCCG
GTTCCTCCGCCGGTCTGTATTCGATGATCAGCTTGTTTTCCGGTGGCGCCTTGCTGAAGTTGGCGATCTTCGCTTTGGGT
ATCATGCCCTACATCACTGCGTCGATCATCCTGCAGCTGCTGACGGTCGTGATTCCGAAGCTGGAAACCCTCAAGAAGGA
GGGCGCGTCCGGTCAGAACAAGATTACCCAGTACACCCGTTACCTCACTCTCGTGCTTGGCCTGTTGCAGGCAACGGCCT
TCGTCACGCTTGCCACCTCCGGTCGTCTATTCACCTGCAGTTTGCCAGTCGTCTACTCCACCTCGGTCTTCGAAGTCGTC
GTCATGATCCTGACCATGACGGCCGGTACGACCATCGTCATGTGGATGGGTGAGCTCATCACCGACCGCGGTATCGGCAA
CGGTATGTCGATCATGATTTTCACCCAGATCGCGGCGCGTTTCCCTGACTCGCTGTGGTCTATCAAGGTCGCTCGAAATG
GTGCCGGTCAGGCTCACGCCTGGTTTATCTTCAGCATGGTGATCGCGATTGGTTTAGCCGTCATGGCTGCGGTCGTGTTC
ATCGAGCAAGGCCAGCGACGTATCCCGGTGCAGTACGCCAAGCGGATGGTGGGGCGCCGAATGTTTGGTGGCTCGACGAC
GTACATTCCGCTCAAGGTAAACCAGTCCGGCGTTATCCCGGTCATCTTCGCCTCGTCGATCCTGTACCTTCCGGTGCTCT
ACGCAACTTTCCGGCCGCAGACGTCTGCGGCAAAGTGGATCGGTCACTACTTCACGCGTGGTGACCATCCGGTGTACAAC
ATCGCCTACTTTCTGCTCATTATCTTCTTCTGCTACTTCTACGTGGCCATCACTTTCGACCCAGTCGAAATGAGTGACAA
CATGAAGAAGTATGGTGGGTTTATTCCCGGCATCCGGGCCGGGAAGCCCACCGAGGACTACTTGGCCTATGTGTTGTCGA
GGCTGACGGCACCTGGGTCCTTGTACTTGGGCCTCATTTCGATGATCCCGACGCTCGCATTCGTTTCCCTCCATGCGAAT
CAGAACTTCCCCTTCGGAGGTACGAGCATCCTCATCATCGTGGGTGTGGCGCTGGACACCGTTAAACAGGTCGAAAGCAA
GTTGCAGCAACGACACTACGAAGGATTCCTGTCATCATGA

Upstream 100 bases:

>100_bases
GCTACCTCCGCTGCGTCCATGCTCCCAGACATTTGCCAGCAGCGCGTCATGGGGGTTGGATGTGCATAGTCAGTAGTCCA
CGAGATGGGAGAGGGCCCGG

Downstream 100 bases:

>100_bases
GATTGCTGATCATGGGCGCCCCGGGAGCAGGCAAGGGGACTCAGGCCACCGCCATCGCCGAGCATTACAGCGTGCCCGCG
ATTTCTACCGGCGATATGTT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MLSAFANAFRTPDLRRKILFTLFILAVFRLGSVIPVPNVNVTNINTCVTQASSGSSAGLYSMISLFSGGALLKLAIFALG
IMPYITASIILQLLTVVIPKLETLKKEGASGQNKITQYTRYLTLVLGLLQATAFVTLATSGRLFTCSLPVVYSTSVFEVV
VMILTMTAGTTIVMWMGELITDRGIGNGMSIMIFTQIAARFPDSLWSIKVARNGAGQAHAWFIFSMVIAIGLAVMAAVVF
IEQGQRRIPVQYAKRMVGRRMFGGSTTYIPLKVNQSGVIPVIFASSILYLPVLYATFRPQTSAAKWIGHYFTRGDHPVYN
IAYFLLIIFFCYFYVAITFDPVEMSDNMKKYGGFIPGIRAGKPTEDYLAYVLSRLTAPGSLYLGLISMIPTLAFVSLHAN
QNFPFGGTSILIIVGVALDTVKQVESKLQQRHYEGFLSS

Sequences:

>Translated_439_residues
MLSAFANAFRTPDLRRKILFTLFILAVFRLGSVIPVPNVNVTNINTCVTQASSGSSAGLYSMISLFSGGALLKLAIFALG
IMPYITASIILQLLTVVIPKLETLKKEGASGQNKITQYTRYLTLVLGLLQATAFVTLATSGRLFTCSLPVVYSTSVFEVV
VMILTMTAGTTIVMWMGELITDRGIGNGMSIMIFTQIAARFPDSLWSIKVARNGAGQAHAWFIFSMVIAIGLAVMAAVVF
IEQGQRRIPVQYAKRMVGRRMFGGSTTYIPLKVNQSGVIPVIFASSILYLPVLYATFRPQTSAAKWIGHYFTRGDHPVYN
IAYFLLIIFFCYFYVAITFDPVEMSDNMKKYGGFIPGIRAGKPTEDYLAYVLSRLTAPGSLYLGLISMIPTLAFVSLHAN
QNFPFGGTSILIIVGVALDTVKQVESKLQQRHYEGFLSS
>Mature_439_residues
MLSAFANAFRTPDLRRKILFTLFILAVFRLGSVIPVPNVNVTNINTCVTQASSGSSAGLYSMISLFSGGALLKLAIFALG
IMPYITASIILQLLTVVIPKLETLKKEGASGQNKITQYTRYLTLVLGLLQATAFVTLATSGRLFTCSLPVVYSTSVFEVV
VMILTMTAGTTIVMWMGELITDRGIGNGMSIMIFTQIAARFPDSLWSIKVARNGAGQAHAWFIFSMVIAIGLAVMAAVVF
IEQGQRRIPVQYAKRMVGRRMFGGSTTYIPLKVNQSGVIPVIFASSILYLPVLYATFRPQTSAAKWIGHYFTRGDHPVYN
IAYFLLIIFFCYFYVAITFDPVEMSDNMKKYGGFIPGIRAGKPTEDYLAYVLSRLTAPGSLYLGLISMIPTLAFVSLHAN
QNFPFGGTSILIIVGVALDTVKQVESKLQQRHYEGFLSS

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=431, Percent_Identity=42.92343387471, Blast_Score=284, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48112; Mature: 48112

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSAFANAFRTPDLRRKILFTLFILAVFRLGSVIPVPNVNVTNINTCVTQASSGSSAGLY
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCCHHH
SMISLFSGGALLKLAIFALGIMPYITASIILQLLTVVIPKLETLKKEGASGQNKITQYTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YLTLVLGLLQATAFVTLATSGRLFTCSLPVVYSTSVFEVVVMILTMTAGTTIVMWMGELI
HHHHHHHHHHHHHHHEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
TDRGIGNGMSIMIFTQIAARFPDSLWSIKVARNGAGQAHAWFIFSMVIAIGLAVMAAVVF
HHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IEQGQRRIPVQYAKRMVGRRMFGGSTTYIPLKVNQSGVIPVIFASSILYLPVLYATFRPQ
HHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
TSAAKWIGHYFTRGDHPVYNIAYFLLIIFFCYFYVAITFDPVEMSDNMKKYGGFIPGIRA
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCCCCCCCC
GKPTEDYLAYVLSRLTAPGSLYLGLISMIPTLAFVSLHANQNFPFGGTSILIIVGVALDT
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEHHHHHHHHH
VKQVESKLQQRHYEGFLSS
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSAFANAFRTPDLRRKILFTLFILAVFRLGSVIPVPNVNVTNINTCVTQASSGSSAGLY
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHEECCCCCCCHHH
SMISLFSGGALLKLAIFALGIMPYITASIILQLLTVVIPKLETLKKEGASGQNKITQYTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YLTLVLGLLQATAFVTLATSGRLFTCSLPVVYSTSVFEVVVMILTMTAGTTIVMWMGELI
HHHHHHHHHHHHHHHEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
TDRGIGNGMSIMIFTQIAARFPDSLWSIKVARNGAGQAHAWFIFSMVIAIGLAVMAAVVF
HHCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IEQGQRRIPVQYAKRMVGRRMFGGSTTYIPLKVNQSGVIPVIFASSILYLPVLYATFRPQ
HHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
TSAAKWIGHYFTRGDHPVYNIAYFLLIIFFCYFYVAITFDPVEMSDNMKKYGGFIPGIRA
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHCCCCCCCCC
GKPTEDYLAYVLSRLTAPGSLYLGLISMIPTLAFVSLHANQNFPFGGTSILIIVGVALDT
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEHHHHHHHHH
VKQVESKLQQRHYEGFLSS
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA