| Definition | Propionibacterium acnes KPA171202, complete genome. |
|---|---|
| Accession | NC_006085 |
| Length | 2,560,265 |
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The map label for this gene is yhdJ [C]
Identifier: 50843079
GI number: 50843079
Start: 1735601
End: 1737592
Strand: Direct
Name: yhdJ [C]
Synonym: PPA1611
Alternate gene names: 50843079
Gene position: 1735601-1737592 (Clockwise)
Preceding gene: 50843078
Following gene: 50843080
Centisome position: 67.79
GC content: 57.33
Gene sequence:
>1992_bases ATGACCGCTCAACGCCTGCAGCTCACCTGGTACAACAAGGACAAGGCTCTCATCCCCACTGAGACCGGCAAGTACGGCTA CACGTGGGTTGACCCCTCTGATCCGCGCTACTGCGAAACCCACACCCTCGTGCTGGACGACTATGTGCAAGGCAGCCAGA CACCGAAGTCTGACGAGTTCGCCTACTCCGAGCGCGCTGACCTGGAGCCCCAGGATGACAACCTGCTGATCTTGGGTGAA TCGGGCGATGTCCTCGAAGCCCTCACCCGCGTGCCCGAGCTTGCCGAGAAGTACGTCGGCAAGGTGAAACTGATCTACAT CGATCCGCCGTTTAACACCGCGCAGACATTCGCTTCGTACGAGGACAACCTAGAGCACTCCATCTGGCTGACCATGATGC GCGACCGACTGCACCACATGAAGAAGCTGCTTGCCGACGACGGCTCCATCTGGGTTCACCTTGACTACGCGGAGAACCAC CGTATGCGACTGCTGCTGGATGAGGTCTTCGGTTGCTCAAACTTCATTGCCGAGTTCGTGTGGCAGAAAGCAGACTCGCC GCGAGGTGACGCTCAACGTGTTTCGGTGGATCAAGATGTGATCCTTTGCTATGCCGCGAGTGGAAGCACAGTCATGAATC GTATGGAAAGGACTGCCGCAGATAACGCCCGCTTCAGTAATCCTGACGGCGACTCTAAAGGTGTTTGGTTCAGTGATAAC CGCTCCGCGCCCACAAACGTTATGTCTTGGCAGCACCCTAGCACCTTTGCAATTCAGCACCCAATCAGTGGCGAGATGAT CTACCCGGCCAAGGGTGGATGCTGGCGTTTTGGTAGAGAACGTCTCCTTGAGTCATTGAACGAGTACGCGGAGTATGCAA GCGGTGATGTAGACATTGCGGCTCGGGTTGCAAACACATCGCTTCGGTCAGATCAGGTTCGTTCAGACATTCCTGACCTG GTATTGGTCGACCCCGCTTCAGCGGCTCAATGTGCTCGCACAAGAATTGATGATGGAAATTGGCCAGAATTCTTCGTGAC TGCAACCAGCTTCGGCAGAAAGTCCTATCCTCCTAATGAAGGTCAGCCTGCCCGTTCATGGTGGCCTAATGATCAGGTGG GACACAATCGCGAAGCTAAGTCAGAAATAAAGGCTCTCTTTTCCGGTGCGACGCCTTTCTCTACCCCCAAGCCTGAACGT CTCCTCGAACGCATCATTCATATCGGGTCGAACCCGGGCGACATTGTGCTGGATGTGTTCGCTGGGTCGGGGACGACGGC AGCCGTCGCGCAGAAGATGGGGCGGCGTTGGGTGACGTGCGAATTGCTGGAGTCGACGTTCACAACGTTTACGCGTCCCC GTCTGGAGAAGGTGCTCAACGATCAAGACCCGGGCGGGATCACTCGGACTAAGGGCGAACGAGTCGACGCTACGGAAGAC GGGCTGCCTGATGGTGTCTCGCCGGAGGACGCCGCGAAATTCACGAGCGTGCTCAACAAGCTGATCAAGGACGACCCGGA ATTGAAGAAAAGCATCGAGGTGAAGACACTGAAGGCTGCCTCGAAGACCAGACGCACGAAGGAAGTAGTGAACTGGCGTG GTGGCGGCGGCTTCCAGGTCGCCCATCTGTCGCCTGCGTGTTTCGACTACGCCCCTGAACTGGACCGGGTGATGCTAACT GCGGCCGCGACCGGACAGACTCTGATCGAGTCGGTGACTGCCAACCTCGGGTTCACACTGTTGCACCCGGATGATGACTA TATTTTTGATGCCCGCCGTGGCAATGCCTTGTTGAAGGTGGTGGAGGGTGTGGCCACGACCGAGATCGTTGACTGGCTTG CTTCCCAAATCCAGCCCGGCGAGACAATCGTGCTGGCCGCCACCACGGTGATGGACGGCGTGCGCCAGCATCTGCGCAAA CTGGTGAAGGGGTCGCGGGTGGTCGCATTGCCCGATGATGTGTTTCGGTACAGCGAAGGTGGTGACCAGTGA
Upstream 100 bases:
>100_bases CACCACCGACGTCCTTGCCCGCATCTGCGAAGCACTCGACTGTGACATCGCCGACATCTGCGAGGTCGTCCCCACCGACC TGAAGGGAGAGACCGACTAG
Downstream 100 bases:
>100_bases TGGCGAACAGGCTCAACATCAGTTTTGACTCCGACATGCTGGAGTCGATCAGTGCCGAGTTCGACCTGCGTGCTCCGAAC AAGGAAGCACTGCGCCAGCT
Product: putative type III restriction-modification system
Products: NA
Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]
Number of amino acids: Translated: 663; Mature: 662
Protein sequence:
>663_residues MTAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEFAYSERADLEPQDDNLLILGE SGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENH RMRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDN RSAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIAARVANTSLRSDQVRSDIPDL VLVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPER LLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATED GLPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQVAHLSPACFDYAPELDRVMLT AAATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKVVEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRK LVKGSRVVALPDDVFRYSEGGDQ
Sequences:
>Translated_663_residues MTAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEFAYSERADLEPQDDNLLILGE SGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENH RMRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDN RSAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIAARVANTSLRSDQVRSDIPDL VLVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPER LLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATED GLPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQVAHLSPACFDYAPELDRVMLT AAATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKVVEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRK LVKGSRVVALPDDVFRYSEGGDQ >Mature_662_residues TAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEFAYSERADLEPQDDNLLILGES GDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENHR MRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDNR SAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIAARVANTSLRSDQVRSDIPDLV LVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPERL LERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATEDG LPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQVAHLSPACFDYAPELDRVMLTA AATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKVVEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRKL VKGSRVVALPDDVFRYSEGGDQ
Specific function: Unknown
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 73780; Mature: 73649
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEF CCCCEEEEEEECCCCEECCCCCCCCCEEECCCCCCCEECEEEEEEEHHHCCCCCCCCCCC AYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASY CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH EDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENHRMRLLLDEVFGCSNFIAEFV HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCHHHHHHHHH WQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDN HHHCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC RSAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIA CCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE ARVANTSLRSDQVRSDIPDLVLVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNE EEHHHCCHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC GQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPERLLERIIHIGSNPGDIVLDVF CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE AGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATED CCCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GLPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQV CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE AHLSPACFDYAPELDRVMLTAAATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKV EECCCHHHHCCCCHHHEEEEHHCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCHHHHH VEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRKLVKGSRVVALPDDVFRYSEG HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC GDQ CCC >Mature Secondary Structure TAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEF CCCEEEEEEECCCCEECCCCCCCCCEEECCCCCCCEECEEEEEEEHHHCCCCCCCCCCC AYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASY CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH EDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENHRMRLLLDEVFGCSNFIAEFV HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCHHHHHHHHH WQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDN HHHCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC RSAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIA CCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE ARVANTSLRSDQVRSDIPDLVLVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNE EEHHHCCHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC GQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPERLLERIIHIGSNPGDIVLDVF CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE AGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATED CCCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GLPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQV CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE AHLSPACFDYAPELDRVMLTAAATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKV EECCCHHHHCCCCHHHEEEEHHCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCHHHHH VEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRKLVKGSRVVALPDDVFRYSEG HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC GDQ CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]