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The map label for this gene is nifU [H]

Identifier: 50843020

GI number: 50843020

Start: 1662935

End: 1663420

Strand: Reverse

Name: nifU [H]

Synonym: PPA1544

Alternate gene names: 50843020

Gene position: 1663420-1662935 (Counterclockwise)

Preceding gene: 50843021

Following gene: 50843019

Centisome position: 64.97

GC content: 54.53

Gene sequence:

>486_bases
ATGAACGTCGAAGAGATGTACCAGCAGATCATCCTGGACCACTACCGGGAGAAGCATCACAGCGGTCTGCGCGAGAACTA
TGACGCCGAGGTAACGCAGGTCAACCCGTCTTGTGGGGATGAGTTGCTGCTGCGGGTGCATGTAGATGGGGACGTCATTA
CTGACGTGTCTTATGATGCTGTGGGCTGTTCGATTTCGCAGGCATCGACGTCTGTTATGACGGATCTTGTTATTGGTAAG
ACTATTGGTGAGGCTCAGGACCTTTATCGGGGCTTTCAGGACATGATGCGCTCGCGTGGCACCGTCGAGCTTGACGAGGA
TATCTACGAGGATGCCGTGGCTTTCGAGGGAGTTGCCAAGCTCATGGCCCGGGTGAAGTGCGCGATGCTGGGCTGGTCGG
CTTTGGAAGATAGTTTGCTTAAGGTGACTGAGGGTTCTGCGGAGAAGGTTGGTGCTGGTATGAGCGAGATGAAGGAAGAG
GGTTGA

Upstream 100 bases:

>100_bases
CCCTCCGTGCGTCGTCATACTTGTACTCCACTACCGACGAGGTGAACCGCCTCGTCGAATCTGTCGAGTACGCTCGGAAC
TTCTTCGCCGGAGGTGTGGC

Downstream 100 bases:

>100_bases
TGAGCGAAGAGAATGCGTTGCCTGCTCAAGAGGTGGCATTGACGGCTATGCCGACTGTTGATGATGTCATTGAGGCGTTG
AAGGACGTTATTGATCCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MNVEEMYQQIILDHYREKHHSGLRENYDAEVTQVNPSCGDELLLRVHVDGDVITDVSYDAVGCSISQASTSVMTDLVIGK
TIGEAQDLYRGFQDMMRSRGTVELDEDIYEDAVAFEGVAKLMARVKCAMLGWSALEDSLLKVTEGSAEKVGAGMSEMKEE
G

Sequences:

>Translated_161_residues
MNVEEMYQQIILDHYREKHHSGLRENYDAEVTQVNPSCGDELLLRVHVDGDVITDVSYDAVGCSISQASTSVMTDLVIGK
TIGEAQDLYRGFQDMMRSRGTVELDEDIYEDAVAFEGVAKLMARVKCAMLGWSALEDSLLKVTEGSAEKVGAGMSEMKEE
G
>Mature_161_residues
MNVEEMYQQIILDHYREKHHSGLRENYDAEVTQVNPSCGDELLLRVHVDGDVITDVSYDAVGCSISQASTSVMTDLVIGK
TIGEAQDLYRGFQDMMRSRGTVELDEDIYEDAVAFEGVAKLMARVKCAMLGWSALEDSLLKVTEGSAEKVGAGMSEMKEE
G

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 17775; Mature: 17775

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVEEMYQQIILDHYREKHHSGLRENYDAEVTQVNPSCGDELLLRVHVDGDVITDVSYDA
CCHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCCEEEEEEECCCCEEECCCCHH
VGCSISQASTSVMTDLVIGKTIGEAQDLYRGFQDMMRSRGTVELDEDIYEDAVAFEGVAK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
LMARVKCAMLGWSALEDSLLKVTEGSAEKVGAGMSEMKEEG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCC
>Mature Secondary Structure
MNVEEMYQQIILDHYREKHHSGLRENYDAEVTQVNPSCGDELLLRVHVDGDVITDVSYDA
CCHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCCEEEEEEECCCCEEECCCCHH
VGCSISQASTSVMTDLVIGKTIGEAQDLYRGFQDMMRSRGTVELDEDIYEDAVAFEGVAK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
LMARVKCAMLGWSALEDSLLKVTEGSAEKVGAGMSEMKEEG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]