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The map label for this gene is lpqB

Identifier: 50842816

GI number: 50842816

Start: 1456786

End: 1458561

Strand: Reverse

Name: lpqB

Synonym: PPA1336

Alternate gene names: 50842816

Gene position: 1458561-1456786 (Counterclockwise)

Preceding gene: 50842817

Following gene: 50842815

Centisome position: 56.97

GC content: 62.67

Gene sequence:

>1776_bases
ATGACCCTACGCCCTTCCCGGCGTGCTGTGCTGTCAGCTGCTGCTGTTTTGCTCACCGGATGCTCCGAAGTACCATCCCA
GGGCCCAGTGAAGCGAGCTGATGGTCCCCGCGCCGCCGCGCAGGAAAGCATCGACGTCGCTCCCCATCCTCCTGCAGACG
GCGCGTCCATCGACCTCGTGGTGGGCGGGTTCCTGCAGGCGATGGCGAGCGCGCGTGACGACTACCGGGTCGCGAGGTCT
TACCTCACTAGCGACATTGCGGATCGATGGGATCCCCATGCGAAAGTCACCATCTACGACGCCACGAACCATAAGCCGGC
CAGCACCGTCGCTACCGCAGCGCTTCAGGCCCCCGTGGTGGGGCAGATCGATTCCAGAGGCCACTATCATCCGACTAGTT
CTCAAACTCTCAACCATGACTTCGGAATGGCGCAGGAATCGGGTCAGTGGCGTATCTCCCGGCCTCCAGAAGGGGTGCTC
ATTTCCCAGTACACCTTTCAACGGAGCTGGTCGACGATTCCCATCTACTTTTTGACAGAGGCGGCGGACCGCCTCGTGCC
CGACGTCATTCATCTTCCCAGTGCCGCCGCCGACCCAGATGCCGCTCTTCGGGCGATGACAGCCGGGGTTCCCAAGCCTC
TCGATGCGGTGCTGCGAACGGCCTTGCCGGACGGGGTGACGGTGACGGGGACGACGTCGGTGGATGCCGTCGGTGTGGTC
ACCGTTCCGTTGAGTGCTTCGGCGGCCCAACTGTCGCCATCCCAGCGGCGTCTGTTAGCCAGCCAGGTCACATGGACCCT
GAATGGTTTCGCAGCGATATCGCGCGTCCGGTTTACTGCTGGTGGCTCTCTGCTTTCGCTTCCGGAGGCGGCAGAAGATC
AAACCGTGTCCGCAGATCTTTACGCCGAGTTCATCCCCCTTCCCGCTACCCACTCACCGACCGTGGTCGCCGTCATCAAG
GGGCAGATGGGGCGTGTCGCGGCCTCAGGACACAACTTCCAGATCATGCCCGGAGCACTGGGGCGAGAAGCGACCACGAA
CAACAGTGTGGCGGAGGTCGCATCTACCCAGCTTACGATGCCAATGATCTCCCCGCGCAGCCCAGGTGCGGTCTGGCATG
CGGTCTCAGCAGATCGACGTTCATTGCTCACCTGGCAGGAAGGGAGCGAGGATATCCAGGTGTTGGCCACTGGCGTGAAC
TTGCTGCGGCCTCAAGTGCTCGGCGATCACAGCATCATGACCTTTTCGGACACGGACCCGACGCTGATCGTCATCGGATC
AGACGGCACCCGAATGTCGACCGTCGTCGATCTCGGTGGGCGCAGGGTGAGGTCGTTCAGCGTGGCCCCTGACGCGGTCC
AGGTCGCCCTCGTCCTTGAACGGGGGAAGACACGTGCGCTGGGGATCGGGCTACTGTCCCGCCAGGAAGGCGCGGTCCAC
CTCAGTCACATAGCCGACATCCCGCTGTCCTCCTCAGACGTGAATCTGTCGATCATTACCGACGTTGCATGGCTATCTCA
GACTCGGTTGTGCGTGCTGGGTCGTGCAATCGACGCTGGTGTCACGACCCCTTACGAGATCGCCGTCGACGGATCTGGCG
CGACGTCAATGGGTCAGCTCACCGCCACTAGCATGGCGGCCGTCGTCGCGTTGCCGAAGGAAACGGGCACCGAGGCAGTC
GTGTTGAGCGAGGACGGGATATTGCTGCGCCACGAGGACAGTTTCCGCTGGCGTCAGATCCTCCAAGGTGTCAGCGCCGT
TGCGGTCACTGCTTGA

Upstream 100 bases:

>100_bases
TCCGATTGGTGGTTCCCAGACAGCCCGGCGGAGTCATCGTCAAGTCCCCGCTCCCCGCATCTCCGACCGATGCCGACCGC
TCTGACGACGAGGAAGAACG

Downstream 100 bases:

>100_bases
CCCTTCCGCCGAAGCAGGCCGAGCCACGAAACTAATGGATCGTGAATACACTCGAATCGCTGGCGGATCTGTTTCTGGGG
GCATGTTGTCCCGGTTGTAC

Product: membrane spanning lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 590

Protein sequence:

>591_residues
MTLRPSRRAVLSAAAVLLTGCSEVPSQGPVKRADGPRAAAQESIDVAPHPPADGASIDLVVGGFLQAMASARDDYRVARS
YLTSDIADRWDPHAKVTIYDATNHKPASTVATAALQAPVVGQIDSRGHYHPTSSQTLNHDFGMAQESGQWRISRPPEGVL
ISQYTFQRSWSTIPIYFLTEAADRLVPDVIHLPSAAADPDAALRAMTAGVPKPLDAVLRTALPDGVTVTGTTSVDAVGVV
TVPLSASAAQLSPSQRRLLASQVTWTLNGFAAISRVRFTAGGSLLSLPEAAEDQTVSADLYAEFIPLPATHSPTVVAVIK
GQMGRVAASGHNFQIMPGALGREATTNNSVAEVASTQLTMPMISPRSPGAVWHAVSADRRSLLTWQEGSEDIQVLATGVN
LLRPQVLGDHSIMTFSDTDPTLIVIGSDGTRMSTVVDLGGRRVRSFSVAPDAVQVALVLERGKTRALGIGLLSRQEGAVH
LSHIADIPLSSSDVNLSIITDVAWLSQTRLCVLGRAIDAGVTTPYEIAVDGSGATSMGQLTATSMAAVVALPKETGTEAV
VLSEDGILLRHEDSFRWRQILQGVSAVAVTA

Sequences:

>Translated_591_residues
MTLRPSRRAVLSAAAVLLTGCSEVPSQGPVKRADGPRAAAQESIDVAPHPPADGASIDLVVGGFLQAMASARDDYRVARS
YLTSDIADRWDPHAKVTIYDATNHKPASTVATAALQAPVVGQIDSRGHYHPTSSQTLNHDFGMAQESGQWRISRPPEGVL
ISQYTFQRSWSTIPIYFLTEAADRLVPDVIHLPSAAADPDAALRAMTAGVPKPLDAVLRTALPDGVTVTGTTSVDAVGVV
TVPLSASAAQLSPSQRRLLASQVTWTLNGFAAISRVRFTAGGSLLSLPEAAEDQTVSADLYAEFIPLPATHSPTVVAVIK
GQMGRVAASGHNFQIMPGALGREATTNNSVAEVASTQLTMPMISPRSPGAVWHAVSADRRSLLTWQEGSEDIQVLATGVN
LLRPQVLGDHSIMTFSDTDPTLIVIGSDGTRMSTVVDLGGRRVRSFSVAPDAVQVALVLERGKTRALGIGLLSRQEGAVH
LSHIADIPLSSSDVNLSIITDVAWLSQTRLCVLGRAIDAGVTTPYEIAVDGSGATSMGQLTATSMAAVVALPKETGTEAV
VLSEDGILLRHEDSFRWRQILQGVSAVAVTA
>Mature_590_residues
TLRPSRRAVLSAAAVLLTGCSEVPSQGPVKRADGPRAAAQESIDVAPHPPADGASIDLVVGGFLQAMASARDDYRVARSY
LTSDIADRWDPHAKVTIYDATNHKPASTVATAALQAPVVGQIDSRGHYHPTSSQTLNHDFGMAQESGQWRISRPPEGVLI
SQYTFQRSWSTIPIYFLTEAADRLVPDVIHLPSAAADPDAALRAMTAGVPKPLDAVLRTALPDGVTVTGTTSVDAVGVVT
VPLSASAAQLSPSQRRLLASQVTWTLNGFAAISRVRFTAGGSLLSLPEAAEDQTVSADLYAEFIPLPATHSPTVVAVIKG
QMGRVAASGHNFQIMPGALGREATTNNSVAEVASTQLTMPMISPRSPGAVWHAVSADRRSLLTWQEGSEDIQVLATGVNL
LRPQVLGDHSIMTFSDTDPTLIVIGSDGTRMSTVVDLGGRRVRSFSVAPDAVQVALVLERGKTRALGIGLLSRQEGAVHL
SHIADIPLSSSDVNLSIITDVAWLSQTRLCVLGRAIDAGVTTPYEIAVDGSGATSMGQLTATSMAAVVALPKETGTEAVV
LSEDGILLRHEDSFRWRQILQGVSAVAVTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lpqB lipoprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPQB_PROAC (Q6A830)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_056043.1
- GeneID:   2933247
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1336
- NMPDR:   fig|267747.1.peg.1320
- OMA:   NNATRTD
- ProtClustDB:   CLSK2763897
- BioCyc:   PACN267747:PPA1336-MONOMER
- HAMAP:   MF_01373
- InterPro:   IPR019606
- InterPro:   IPR018910
- SMART:   SM00909

Pfam domain/function: PF10646 Germane; PF10647 Gmad1

EC number: NA

Molecular weight: Translated: 62143; Mature: 62012

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRPSRRAVLSAAAVLLTGCSEVPSQGPVKRADGPRAAAQESIDVAPHPPADGASIDLV
CCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEE
VGGFLQAMASARDDYRVARSYLTSDIADRWDPHAKVTIYDATNHKPASTVATAALQAPVV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCE
GQIDSRGHYHPTSSQTLNHDFGMAQESGQWRISRPPEGVLISQYTFQRSWSTIPIYFLTE
EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCEEEEEEEEH
AADRLVPDVIHLPSAAADPDAALRAMTAGVPKPLDAVLRTALPDGVTVTGTTSVDAVGVV
HHHHHCCHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEE
TVPLSASAAQLSPSQRRLLASQVTWTLNGFAAISRVRFTAGGSLLSLPEAAEDQTVSADL
EEECCCCHHHCCHHHHHHHHHHHEEEECCHHHHEEEEEECCCCEEECCCCCCCCEEEHHH
YAEFIPLPATHSPTVVAVIKGQMGRVAASGHNFQIMPGALGREATTNNSVAEVASTQLTM
HHHEECCCCCCCCEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCCCCHHHHHHCEEEE
PMISPRSPGAVWHAVSADRRSLLTWQEGSEDIQVLATGVNLLRPQVLGDHSIMTFSDTDP
EECCCCCCCCEEEECCCCCHHEEEECCCCCCEEEEEHHHHHHCHHHCCCCEEEEECCCCC
TLIVIGSDGTRMSTVVDLGGRRVRSFSVAPDAVQVALVLERGKTRALGIGLLSRQEGAVH
EEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEEECCCCCEE
LSHIADIPLSSSDVNLSIITDVAWLSQTRLCVLGRAIDAGVTTPYEIAVDGSGATSMGQL
EEEHCCCCCCCCCCEEEEEEHHHHHHCCCEEEEECHHHCCCCCCEEEEECCCCCCCCCHH
TATSMAAVVALPKETGTEAVVLSEDGILLRHEDSFRWRQILQGVSAVAVTA
HHHHEEEEEEECCCCCCCEEEEECCCEEEEECCCHHHHHHHCCCCEEEEEC
>Mature Secondary Structure 
TLRPSRRAVLSAAAVLLTGCSEVPSQGPVKRADGPRAAAQESIDVAPHPPADGASIDLV
CCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEE
VGGFLQAMASARDDYRVARSYLTSDIADRWDPHAKVTIYDATNHKPASTVATAALQAPVV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCE
GQIDSRGHYHPTSSQTLNHDFGMAQESGQWRISRPPEGVLISQYTFQRSWSTIPIYFLTE
EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCEEEEEEEEH
AADRLVPDVIHLPSAAADPDAALRAMTAGVPKPLDAVLRTALPDGVTVTGTTSVDAVGVV
HHHHHCCHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEE
TVPLSASAAQLSPSQRRLLASQVTWTLNGFAAISRVRFTAGGSLLSLPEAAEDQTVSADL
EEECCCCHHHCCHHHHHHHHHHHEEEECCHHHHEEEEEECCCCEEECCCCCCCCEEEHHH
YAEFIPLPATHSPTVVAVIKGQMGRVAASGHNFQIMPGALGREATTNNSVAEVASTQLTM
HHHEECCCCCCCCEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCCCCHHHHHHCEEEE
PMISPRSPGAVWHAVSADRRSLLTWQEGSEDIQVLATGVNLLRPQVLGDHSIMTFSDTDP
EECCCCCCCCEEEECCCCCHHEEEECCCCCCEEEEEHHHHHHCHHHCCCCEEEEECCCCC
TLIVIGSDGTRMSTVVDLGGRRVRSFSVAPDAVQVALVLERGKTRALGIGLLSRQEGAVH
EEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEEECCCCCEE
LSHIADIPLSSSDVNLSIITDVAWLSQTRLCVLGRAIDAGVTTPYEIAVDGSGATSMGQL
EEEHCCCCCCCCCCEEEEEEHHHHHHCCCEEEEECHHHCCCCCCEEEEECCCCCCCCCHH
TATSMAAVVALPKETGTEAVVLSEDGILLRHEDSFRWRQILQGVSAVAVTA
HHHHEEEEEEECCCCCCCEEEEECCCEEEEECCCHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA