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The map label for this gene is lrtA [H]

Identifier: 50842814

GI number: 50842814

Start: 1455267

End: 1455935

Strand: Reverse

Name: lrtA [H]

Synonym: PPA1334

Alternate gene names: 50842814

Gene position: 1455935-1455267 (Counterclockwise)

Preceding gene: 50842815

Following gene: 50842813

Centisome position: 56.87

GC content: 59.04

Gene sequence:

>669_bases
GTGCCTTGTGTGTCAGCGTCGGAAAGACCGATGCAAACCCCAGCACAGGAGGTTGTCATGGAGGTCATCGTTTCGGGACG
GCATTGCCACGTCAGTGACGACGTGCGCGCCCAAGTCGAGGACAGGCTCTCCGGGGTCGAAAAGTTGAAGGACCGGGTCC
AGCGCGCCGAGGTGGTTTTCACCGCCCAAGGCACTAAGGGACCCAAAGACCAGGCCATGACGTGTGAGATCACGCTGCGC
GCTAAGGGGCCGGTAGTGCGAGCCGTCGGACAGGCGGAGGACAAGATGGTTGCCTTTGACATGGCCGCCGATCGGCTTCG
CACCCAGTTAGTCAAGGCTGCGGATCGTCGTCGCAGCCGCCGCGGGCTGCGTGTTTCTCAGGTCCTAGACATTTTACCTG
AGGAGAGCACCGACGATGCACCCGATATCCTCACCACAAGGACGATCGCAGGTGACGTGGAAGTCACCGGGGATAGCCCC
ATCTACGTTAAGGAGAAGATTTTCCAGGCCGTCCCTCTGACCCTGGCCCAGGCTCTCGACGAGATGGAATTAGTCGGTCA
TGACTTCTTCCTCTACCTTGATCAGGATTCCAAGCGGCCTAGCGTTGTGTACCGGCGTAAGAAGGGATACAACTACGGCG
TCATCCATCTGGACCTTGACCACGAGTAA

Upstream 100 bases:

>100_bases
CTTGCCAAACACCTGTTGGGAACGTTCCGTATGGGCTAGCGTAGACACATGGCACGACCGAACGGCACCCGGATCTCTCA
TCAGAGGGTGGAACACGGTC

Downstream 100 bases:

>100_bases
CACCTCCTGAAGTTTCGAGGTCGCGGCGATGCGGGTCTTCCCGCATCGCCGCTTGTCATGTTGGGGTGATTGACTCTCTG
TGGCTTCCGGTGCCGGCATG

Product: putative ribosomal S30AE, sigma 54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MPCVSASERPMQTPAQEVVMEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITLR
AKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAADRRRSRRGLRVSQVLDILPEESTDDAPDILTTRTIAGDVEVTGDSP
IYVKEKIFQAVPLTLAQALDEMELVGHDFFLYLDQDSKRPSVVYRRKKGYNYGVIHLDLDHE

Sequences:

>Translated_222_residues
MPCVSASERPMQTPAQEVVMEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITLR
AKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAADRRRSRRGLRVSQVLDILPEESTDDAPDILTTRTIAGDVEVTGDSP
IYVKEKIFQAVPLTLAQALDEMELVGHDFFLYLDQDSKRPSVVYRRKKGYNYGVIHLDLDHE
>Mature_221_residues
PCVSASERPMQTPAQEVVMEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVFTAQGTKGPKDQAMTCEITLRA
KGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAADRRRSRRGLRVSQVLDILPEESTDDAPDILTTRTIAGDVEVTGDSPI
YVKEKIFQAVPLTLAQALDEMELVGHDFFLYLDQDSKRPSVVYRRKKGYNYGVIHLDLDHE

Specific function: Unknown

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 24834; Mature: 24702

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCVSASERPMQTPAQEVVMEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVF
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHEEEE
TAQGTKGPKDQAMTCEITLRAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAADRRRSR
EECCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
RGLRVSQVLDILPEESTDDAPDILTTRTIAGDVEVTGDSPIYVKEKIFQAVPLTLAQALD
CCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCEEECCCCCEEHHHHHHHHHHHHHHHHHH
EMELVGHDFFLYLDQDSKRPSVVYRRKKGYNYGVIHLDLDHE
HHHHHCCEEEEEEECCCCCCCCEEECCCCCCEEEEEEEECCC
>Mature Secondary Structure 
PCVSASERPMQTPAQEVVMEVIVSGRHCHVSDDVRAQVEDRLSGVEKLKDRVQRAEVVF
CCCCCCCCCCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHEEEE
TAQGTKGPKDQAMTCEITLRAKGPVVRAVGQAEDKMVAFDMAADRLRTQLVKAADRRRSR
EECCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
RGLRVSQVLDILPEESTDDAPDILTTRTIAGDVEVTGDSPIYVKEKIFQAVPLTLAQALD
CCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCEEECCCCCEEHHHHHHHHHHHHHHHHHH
EMELVGHDFFLYLDQDSKRPSVVYRRKKGYNYGVIHLDLDHE
HHHHHCCEEEEEEECCCCCCCCEEECCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8063707 [H]