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The map label for this gene is 50842774

Identifier: 50842774

GI number: 50842774

Start: 1405625

End: 1406422

Strand: Reverse

Name: 50842774

Synonym: PPA1293

Alternate gene names: NA

Gene position: 1406422-1405625 (Counterclockwise)

Preceding gene: 50842775

Following gene: 50842773

Centisome position: 54.93

GC content: 62.28

Gene sequence:

>798_bases
GTGACTGAGCGTGACAATCGGGCTCAGGACCTGGTGCGCACCCTGTTAGCCGAAGGGTGGAGCCAAGCCGAGATTGCCCG
ACGAATCGGCCGAGACCCCCGCCTGGTGCGGTTCGTGCTAAAAGGGCTTAAGCCTGGCACCAACCTGGTCGAGGCGTTAA
CACAGTTGGAGCGGGGCGAGGAGGTTACCCCGCCGCGGCGTCGGCATGATCGCAAAGGCCGGACCGCGAAGGTACGCGGT
AAGCGCGGAAAACCATCTCACCGTCCCACCGAACCGGATGCCGAACTCCTGCACCCGAGACGAAGCCGCGCACCACAACA
GTCCGACGAGGAGGTGCTGGGCGAGGAACACATTGAAACCCTGCCGAGGAAACGCCGCCACGGCACAACCCCGTCAACGA
GTCAGCCCGAGCGCCTCGAACGGCAGATGCGCAAGCGCAACCTGCTGCGTCACGAGGTCACAAACCTGCCCCACCACCGT
TCTTCCCACACACTCCAATTCCCTCGCGACAACGAGGATGCGCGAGGACAAGCCTCCGATCTGCTCACCGAGATCCTGTC
AGAAGGCCGAGGCCAGCGGATGCACGCGAAACTATGGATCGAAGTCGATGAAGGTGGCCGTCGGGAGCTCCAGATGGTGC
GGTTAGGGGATAAGGGCGGCTACGACTGCGGTTTCGCTTTGGAAGACGTGCGGATGTTCCGGGATGCGTTGTCGTGGCTA
GAGGACCAGGCGGGTCAGCAGTATGGCAATGTCGCCGATAGGGGTCGGCTAGTCGGTGTAGAAATCGATGTTTGGTGA

Upstream 100 bases:

>100_bases
GGTGTCTTGCCGGGCCCTTTGGAAGCGCCTCAGACCGGATCGGAGCGGGCTGCTCTATCAGAGCAGGCCGAGCAAGTAGG
ACTCCCCGAGGAGGCGACCA

Downstream 100 bases:

>100_bases
AAGCCATGATTTTGATGGGCAGACTTAGGCCTGCGAGCTTTGCGTAGGGATTGAGTTTGGGCACCGTACGGGGGTATGCG
AGATGCCCAAGAGCATCATG

Product: putative ribonuclease E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTERDNRAQDLVRTLLAEGWSQAEIARRIGRDPRLVRFVLKGLKPGTNLVEALTQLERGEEVTPPRRRHDRKGRTAKVRG
KRGKPSHRPTEPDAELLHPRRSRAPQQSDEEVLGEEHIETLPRKRRHGTTPSTSQPERLERQMRKRNLLRHEVTNLPHHR
SSHTLQFPRDNEDARGQASDLLTEILSEGRGQRMHAKLWIEVDEGGRRELQMVRLGDKGGYDCGFALEDVRMFRDALSWL
EDQAGQQYGNVADRGRLVGVEIDVW

Sequences:

>Translated_265_residues
MTERDNRAQDLVRTLLAEGWSQAEIARRIGRDPRLVRFVLKGLKPGTNLVEALTQLERGEEVTPPRRRHDRKGRTAKVRG
KRGKPSHRPTEPDAELLHPRRSRAPQQSDEEVLGEEHIETLPRKRRHGTTPSTSQPERLERQMRKRNLLRHEVTNLPHHR
SSHTLQFPRDNEDARGQASDLLTEILSEGRGQRMHAKLWIEVDEGGRRELQMVRLGDKGGYDCGFALEDVRMFRDALSWL
EDQAGQQYGNVADRGRLVGVEIDVW
>Mature_264_residues
TERDNRAQDLVRTLLAEGWSQAEIARRIGRDPRLVRFVLKGLKPGTNLVEALTQLERGEEVTPPRRRHDRKGRTAKVRGK
RGKPSHRPTEPDAELLHPRRSRAPQQSDEEVLGEEHIETLPRKRRHGTTPSTSQPERLERQMRKRNLLRHEVTNLPHHRS
SHTLQFPRDNEDARGQASDLLTEILSEGRGQRMHAKLWIEVDEGGRRELQMVRLGDKGGYDCGFALEDVRMFRDALSWLE
DQAGQQYGNVADRGRLVGVEIDVW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30576; Mature: 30445

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERDNRAQDLVRTLLAEGWSQAEIARRIGRDPRLVRFVLKGLKPGTNLVEALTQLERGE
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
EVTPPRRRHDRKGRTAKVRGKRGKPSHRPTEPDAELLHPRRSRAPQQSDEEVLGEEHIET
CCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHCCCCCCHHHHHHHHHHHH
LPRKRRHGTTPSTSQPERLERQMRKRNLLRHEVTNLPHHRSSHTLQFPRDNEDARGQASD
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHH
LLTEILSEGRGQRMHAKLWIEVDEGGRRELQMVRLGDKGGYDCGFALEDVRMFRDALSWL
HHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
EDQAGQQYGNVADRGRLVGVEIDVW
HHHHHHHHCCHHHCCEEEEEEEECC
>Mature Secondary Structure 
TERDNRAQDLVRTLLAEGWSQAEIARRIGRDPRLVRFVLKGLKPGTNLVEALTQLERGE
CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
EVTPPRRRHDRKGRTAKVRGKRGKPSHRPTEPDAELLHPRRSRAPQQSDEEVLGEEHIET
CCCCCHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHCCCCCCHHHHHHHHHHHH
LPRKRRHGTTPSTSQPERLERQMRKRNLLRHEVTNLPHHRSSHTLQFPRDNEDARGQASD
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHH
LLTEILSEGRGQRMHAKLWIEVDEGGRRELQMVRLGDKGGYDCGFALEDVRMFRDALSWL
HHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
EDQAGQQYGNVADRGRLVGVEIDVW
HHHHHHHHCCHHHCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA