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The map label for this gene is yhdW [H]

Identifier: 50842704

GI number: 50842704

Start: 1331792

End: 1332517

Strand: Reverse

Name: yhdW [H]

Synonym: PPA1224

Alternate gene names: 50842704

Gene position: 1332517-1331792 (Counterclockwise)

Preceding gene: 50842706

Following gene: 50842703

Centisome position: 52.05

GC content: 58.95

Gene sequence:

>726_bases
ATGGCCGTCAACAAGGGAATTGAGAACACCCTTGCTGCCTTCGGCCACGCGGTCGAGGTGGGATGCACCTACCTTGAAAC
TGACGTTCACGCGACCAGCGACGGGGTGCTAGTGGCCTTCCACGATCCGATACTCGATCGCGTCACTGAATCAGGCGGAG
TCATCGCCGCCATGCCGTGGCACAAGGTCAAACAAGCCAAGGTTGGTGGCGAACCGATCCCCACCTTAGATGAGATTTTC
GACGCCTTTCCCGAGGCGTTCATCAATATCGACATCAAGCATGATGGCGCCACCATGCCGCTCATCGACGTTCTTTCCCG
TCACCGGGCTTGGAGTCGGGTTTGCGTCGGGTCGTTCAGCAGTAAACGCATCCAGACCTTCCGTCGCCTGGTTCAGGGAC
GCACTGCGACTGCGGTGGGGCCGGTGGGAGTCGGCTGGGCTGTCATCGGCCCTCATAGCATGCAGATGGCACAGTCCCAT
GGGAATGCGTACCAGGTGCCGCATCGCTTGACCCGGTATGGGGTGCCCCTTGTGACACCGACCTTTATTAAAGCTGCCCA
TCGTCAGGGGCGAGCTGTTCACGTCTGGACGGTTAATGAGATCTCAGAGGCTCGAGAACTGATGGATATGGGGGTCGACG
GCATCGTCACAGATCGCCCAGACCTCATGTGCGAGTTTGCCCGCGTTCATCAACCGAAAGAAGCGCCAACTCTCATCCCG
CGGTGA

Upstream 100 bases:

>100_bases
CTGATACTTCTCCGGAGCACAATGGACTGCTGTGAGAGCCACTGACTATCCCTATTGCCAGAGTCCGTTCACCGTCTTAG
CTCATCGTGGTGGTGCTGGC

Downstream 100 bases:

>100_bases
TCCCACTGTGATGGCTGACATTATCGGCCACTACCGTACGTCCACGAAGTGAACGTACGGTAGTGGCCATCCGTTCTGCT
CCCCGAGATTTGTGACTTGT

Product: putative glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MAVNKGIENTLAAFGHAVEVGCTYLETDVHATSDGVLVAFHDPILDRVTESGGVIAAMPWHKVKQAKVGGEPIPTLDEIF
DAFPEAFINIDIKHDGATMPLIDVLSRHRAWSRVCVGSFSSKRIQTFRRLVQGRTATAVGPVGVGWAVIGPHSMQMAQSH
GNAYQVPHRLTRYGVPLVTPTFIKAAHRQGRAVHVWTVNEISEARELMDMGVDGIVTDRPDLMCEFARVHQPKEAPTLIP
R

Sequences:

>Translated_241_residues
MAVNKGIENTLAAFGHAVEVGCTYLETDVHATSDGVLVAFHDPILDRVTESGGVIAAMPWHKVKQAKVGGEPIPTLDEIF
DAFPEAFINIDIKHDGATMPLIDVLSRHRAWSRVCVGSFSSKRIQTFRRLVQGRTATAVGPVGVGWAVIGPHSMQMAQSH
GNAYQVPHRLTRYGVPLVTPTFIKAAHRQGRAVHVWTVNEISEARELMDMGVDGIVTDRPDLMCEFARVHQPKEAPTLIP
R
>Mature_240_residues
AVNKGIENTLAAFGHAVEVGCTYLETDVHATSDGVLVAFHDPILDRVTESGGVIAAMPWHKVKQAKVGGEPIPTLDEIFD
AFPEAFINIDIKHDGATMPLIDVLSRHRAWSRVCVGSFSSKRIQTFRRLVQGRTATAVGPVGVGWAVIGPHSMQMAQSHG
NAYQVPHRLTRYGVPLVTPTFIKAAHRQGRAVHVWTVNEISEARELMDMGVDGIVTDRPDLMCEFARVHQPKEAPTLIPR

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=233, Percent_Identity=25.3218884120172, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26385; Mature: 26253

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVNKGIENTLAAFGHAVEVGCTYLETDVHATSDGVLVAFHDPILDRVTESGGVIAAMPW
CCCCCCHHHHHHHHHHHHHHCCEEEECCCEECCCCEEEEECCHHHHHHHCCCCEEEECCH
HKVKQAKVGGEPIPTLDEIFDAFPEAFINIDIKHDGATMPLIDVLSRHRAWSRVCVGSFS
HHHHHHHCCCCCCCCHHHHHHHCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
SKRIQTFRRLVQGRTATAVGPVGVGWAVIGPHSMQMAQSHGNAYQVPHRLTRYGVPLVTP
HHHHHHHHHHHCCCCCCEECCCCCCEEEECCHHHHHHHHCCCEEECCHHHHHCCCCCCCH
TFIKAAHRQGRAVHVWTVNEISEARELMDMGVDGIVTDRPDLMCEFARVHQPKEAPTLIP
HHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCC
R
C
>Mature Secondary Structure 
AVNKGIENTLAAFGHAVEVGCTYLETDVHATSDGVLVAFHDPILDRVTESGGVIAAMPW
CCCCCHHHHHHHHHHHHHHCCEEEECCCEECCCCEEEEECCHHHHHHHCCCCEEEECCH
HKVKQAKVGGEPIPTLDEIFDAFPEAFINIDIKHDGATMPLIDVLSRHRAWSRVCVGSFS
HHHHHHHCCCCCCCCHHHHHHHCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
SKRIQTFRRLVQGRTATAVGPVGVGWAVIGPHSMQMAQSHGNAYQVPHRLTRYGVPLVTP
HHHHHHHHHHHCCCCCCEECCCCCCEEEECCHHHHHHHHCCCEEECCHHHHHCCCCCCCH
TFIKAAHRQGRAVHVWTVNEISEARELMDMGVDGIVTDRPDLMCEFARVHQPKEAPTLIP
HHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]