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The map label for this gene is nusB

Identifier: 50842668

GI number: 50842668

Start: 1295058

End: 1295843

Strand: Direct

Name: nusB

Synonym: PPA1188

Alternate gene names: 50842668

Gene position: 1295058-1295843 (Clockwise)

Preceding gene: 161621796

Following gene: 50842669

Centisome position: 50.58

GC content: 59.16

Gene sequence:

>786_bases
GTGAGTACGAATACCGTTCCCACCCCTGACGACGAGGGCCCCACCGAGTGGATCGGCGACCTCGAGGTCAGGCGCGTCAG
TGGGGACATCCAAGAACACGCAGACCTCTCGACACGGTCCAAAGCCCGTAAACAGGCTCTCGACATTCTGTTCGAGGCAG
ACCTCATAGGTACTGATCCGCTCGAAGTCCTCGCAGCGCGTCCAGGTGTCTTCACCAACCCAGTGAGGCCGTTCGCGGCT
GATTTGGTCCGTGGTGTGGCAGCCACCCAAGTCGGCCTTGACTCGGTCCTGACTGATTGCCTTTCTGAAGGCTGGACACT
GGCCCGGATGCCGCGGGTGGACCGTATTCTCGCCCGCCTCGGTGCGTTTGAGATCTTGCATACGGATACCCCGAATCCGG
CGGTGATTTCGGAGGCGATCGAGTTGAGCGAAGAGTTCTCGACCGACGACTCGGCGCCTTTCCTCAATGGGCTTCTCGGT
GCGGTCATCACTCATGGGCCCGCCCGCGTCGAGGATCAGCCGTCCGACGACGCAGCCTCTTTAACTTGCCCCGCGCCGGA
CGGGGGTAGTGAGCAGCCGCCCATCACAGTTGACGATGTCGGATCCATGGCTAGCAGTTCAGACTCGTTCCCTGCAGAGG
TGGGCAATGTGGACACGACTAGCGGAAATGCCAGCGATCCTGAAAATTCTGCTGATGATTTTGAGCTGACCGGCGGAGAA
CACCCAACTTCCAAAGATCATGAATTGGCTACAGATCTCCACAAAAAGGACACAACCGACGACTAA

Upstream 100 bases:

>100_bases
AGACTGGTCGTGAGATCCAGGTGCCGCTGTTCATCACTACGGGTGAAAAGGTCAAGGTCGACACCCGTTCCGGCGATTAC
CTCGGCCGCATCTCCGAGAA

Downstream 100 bases:

>100_bases
GCGGACTAATGTGCCGATCGTCTCCATCGGGTCCCCGGTGGAGACGATCATCCGCTGTCGCGCGGAGGCGCTGCACACTT
GAATTGGAGGGGCTCGTGTC

Product: putative NusB-family protein

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSTNTVPTPDDEGPTEWIGDLEVRRVSGDIQEHADLSTRSKARKQALDILFEADLIGTDPLEVLAARPGVFTNPVRPFAA
DLVRGVAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEFSTDDSAPFLNGLLG
AVITHGPARVEDQPSDDAASLTCPAPDGGSEQPPITVDDVGSMASSSDSFPAEVGNVDTTSGNASDPENSADDFELTGGE
HPTSKDHELATDLHKKDTTDD

Sequences:

>Translated_261_residues
MSTNTVPTPDDEGPTEWIGDLEVRRVSGDIQEHADLSTRSKARKQALDILFEADLIGTDPLEVLAARPGVFTNPVRPFAA
DLVRGVAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEFSTDDSAPFLNGLLG
AVITHGPARVEDQPSDDAASLTCPAPDGGSEQPPITVDDVGSMASSSDSFPAEVGNVDTTSGNASDPENSADDFELTGGE
HPTSKDHELATDLHKKDTTDD
>Mature_260_residues
STNTVPTPDDEGPTEWIGDLEVRRVSGDIQEHADLSTRSKARKQALDILFEADLIGTDPLEVLAARPGVFTNPVRPFAAD
LVRGVAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEFSTDDSAPFLNGLLGA
VITHGPARVEDQPSDDAASLTCPAPDGGSEQPPITVDDVGSMASSSDSFPAEVGNVDTTSGNASDPENSADDFELTGGEH
PTSKDHELATDLHKKDTTDD

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_PROAC (Q6A8H8)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_055895.1
- HSSP:   P95020
- ProteinModelPortal:   Q6A8H8
- SMR:   Q6A8H8
- GeneID:   2933201
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1188
- NMPDR:   fig|267747.1.peg.1172
- ProtClustDB:   CLSK2763799
- BioCyc:   PACN267747:PPA1188-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 27600; Mature: 27469

Theoretical pI: Translated: 3.92; Mature: 3.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNTVPTPDDEGPTEWIGDLEVRRVSGDIQEHADLSTRSKARKQALDILFEADLIGTDP
CCCCCCCCCCCCCHHHHHCCHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCH
LEVLAARPGVFTNPVRPFAADLVRGVAATQVGLDSVLTDCLSEGWTLARMPRVDRILARL
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHCCHHHHHHHHH
GAFEILHTDTPNPAVISEAIELSEEFSTDDSAPFLNGLLGAVITHGPARVEDQPSDDAAS
HHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
LTCPAPDGGSEQPPITVDDVGSMASSSDSFPAEVGNVDTTSGNASDPENSADDFELTGGE
EECCCCCCCCCCCCEEHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCC
HPTSKDHELATDLHKKDTTDD
CCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
STNTVPTPDDEGPTEWIGDLEVRRVSGDIQEHADLSTRSKARKQALDILFEADLIGTDP
CCCCCCCCCCCCHHHHHCCHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCH
LEVLAARPGVFTNPVRPFAADLVRGVAATQVGLDSVLTDCLSEGWTLARMPRVDRILARL
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHCCHHHHHHHHH
GAFEILHTDTPNPAVISEAIELSEEFSTDDSAPFLNGLLGAVITHGPARVEDQPSDDAAS
HHHHEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
LTCPAPDGGSEQPPITVDDVGSMASSSDSFPAEVGNVDTTSGNASDPENSADDFELTGGE
EECCCCCCCCCCCCEEHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCC
HPTSKDHELATDLHKKDTTDD
CCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA