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The map label for this gene is yqgF [C]

Identifier: 50842659

GI number: 50842659

Start: 1286756

End: 1287238

Strand: Direct

Name: yqgF [C]

Synonym: PPA1179

Alternate gene names: 50842659

Gene position: 1286756-1287238 (Clockwise)

Preceding gene: 50842658

Following gene: 50842660

Centisome position: 50.26

GC content: 62.53

Gene sequence:

>483_bases
GTGAACCCTGCCGAACGTCCGGACACGTCTCTGTGCGGTGTGAGACTTGCCATCGACTGGGGAAAAGCACGGATTGGCGT
GGCCGCGAGCGACCGCGACGCGATTCTGGCCTTCCCTGTTGAGACGGTGCATACCGCCGACCGCCCCGTGCAGCGCTTGG
CCGAAATCGTTGCCGAGTACGAACCAGTTGAGGTCATCATGGGGCTTCCGGTTGCCCTTAATGGGACCGAGCAGTTGGCC
GCGCAAGACGTTCGGGATGCCGGACGCCAGTTGACCGAGGCTATTAACCCGATCCCAGTGCGCTGGGTCGATGAGAGAAT
GACCACGCGTACGGCGGCTCGAGCACTTCACGAGGCGGGGCGCAACGCACGTAAACAGCGTGGCGTGATTGATCAGGCCG
CTGCTGTGGCCATACTGGAACACGTGTTGGAGCAAGTCCGATTAGGCCAATCGGAGACGGCGACGGGAGGGGCGGATTCG
TGA

Upstream 100 bases:

>100_bases
GCCGCGGTGGCGGTAAGGACGACATGGCCCAGGGGGCTGGCAGCGACCCCACCGGTATCGACGCCGCTCTGCGTGCTGTT
AACACTGAACTGACCGCGCT

Downstream 100 bases:

>100_bases
GCGGACCGTTCAACGAGCACGATGACCCGAAGGCGGAATTTTGGTACAAACTTCGCAGCGCGGTCGCCGTCATCCTTTCC
CTGACCGTGCTCGTCGGCGG

Product: endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MNPAERPDTSLCGVRLAIDWGKARIGVAASDRDAILAFPVETVHTADRPVQRLAEIVAEYEPVEVIMGLPVALNGTEQLA
AQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAAAVAILEHVLEQVRLGQSETATGGADS

Sequences:

>Translated_160_residues
MNPAERPDTSLCGVRLAIDWGKARIGVAASDRDAILAFPVETVHTADRPVQRLAEIVAEYEPVEVIMGLPVALNGTEQLA
AQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAAAVAILEHVLEQVRLGQSETATGGADS
>Mature_160_residues
MNPAERPDTSLCGVRLAIDWGKARIGVAASDRDAILAFPVETVHTADRPVQRLAEIVAEYEPVEVIMGLPVALNGTEQLA
AQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAGRNARKQRGVIDQAAAVAILEHVLEQVRLGQSETATGGADS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=137, Percent_Identity=33.5766423357664, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PROAC (Q6A8I7)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_055886.1
- ProteinModelPortal:   Q6A8I7
- SMR:   Q6A8I7
- GeneID:   2931146
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1179
- NMPDR:   fig|267747.1.peg.1163
- HOGENOM:   HBG607919
- OMA:   GRSVIDQ
- ProtClustDB:   CLSK2763791
- BioCyc:   PACN267747:PPA1179-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17250; Mature: 17250

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPAERPDTSLCGVRLAIDWGKARIGVAASDRDAILAFPVETVHTADRPVQRLAEIVAEY
CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECHHHHHCCHHHHHHHHHHHHCC
EPVEVIMGLPVALNGTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAG
CCHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
RNARKQRGVIDQAAAVAILEHVLEQVRLGQSETATGGADS
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNPAERPDTSLCGVRLAIDWGKARIGVAASDRDAILAFPVETVHTADRPVQRLAEIVAEY
CCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECHHHHHCCHHHHHHHHHHHHCC
EPVEVIMGLPVALNGTEQLAAQDVRDAGRQLTEAINPIPVRWVDERMTTRTAARALHEAG
CCHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
RNARKQRGVIDQAAAVAILEHVLEQVRLGQSETATGGADS
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA