Click here to switch to the map view.

The map label for this gene is 50842653

Identifier: 50842653

GI number: 50842653

Start: 1278152

End: 1278796

Strand: Direct

Name: 50842653

Synonym: PPA1173

Alternate gene names: NA

Gene position: 1278152-1278796 (Clockwise)

Preceding gene: 50842649

Following gene: 50842654

Centisome position: 49.92

GC content: 57.52

Gene sequence:

>645_bases
ATGTCTCAGTCACAGTGCGCACGATCGTCTCGTCGTGGTCCACGTGGTGAGGTTGGGGCTGCGAGAGCCGCTATTTTGGC
CGCAGCCCGCTCCCTTTTTCTGGCCGGTGACTTCCAGTCAGTGAGCCTAAGAGCTATAGCCCGCGAAGCTGAGGTGGACA
CCTCGTTGGTGAGCTACTACTTCGGATCTAAGCAATCCCTCTACAACGAGGCGATGTCCCTTCCCAATGGTCCGCACCGG
ATTATTGCTGAGGTGTGTTCGCGAACTGACCCTGATCATCTGGGGGAGGCCCTGGTCAAGGCGTTCATCGATGCTTGGGA
TGGTCACCTTGGCCTGGGAGGACCGGATCCGCAAATGCAAGGTGTGGTGCAGGCACTTCTCACCCAGCCTGACGCCTTCG
ACATGATGCGTCAGTTTTACACCGAGGAAATTTTGGCCCCAGTTGTCAATTTACTCATTCCCCGATTCGGTGCAGAAGAG
GCGGGGATACGGGCCTCTCTTGGACTCTCGCAATTGCTGGGGATTTTCACGGCTCGCTACGTCATTGGGTTGCAGTCCCT
AGCAAATCTTCCGGCGGCAGAACTCATCGGCCGGGAGGGGCCTGCCCTACAGAGCACCCTCACTGGACCGACCATCAACG
GTTAA

Upstream 100 bases:

>100_bases
CCGATGTGTGCGTCCATGTCTCCATTTCATCACCGTGGAAATCACTTCGCAGCAGTAGGGGGGCTTTTTCAGCCAAGTCA
TTGAGGAGTACGGTCATGGC

Downstream 100 bases:

>100_bases
CACTTTTTGCCGCAGGAGAGGTCGGTTCACTTACCGTAGTGCCACGGCTAGCGATAGAGTCGCAGTCAAAGCTTGGCGCA
TGGCCGCGCCTGACGCCCAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Regulatory Protein TetR; TetR-Family Transcriptional Regulator; Regulatory Protein; HTH-Type Transcriptional Regulator; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSQSQCARSSRRGPRGEVGAARAAILAAARSLFLAGDFQSVSLRAIAREAEVDTSLVSYYFGSKQSLYNEAMSLPNGPHR
IIAEVCSRTDPDHLGEALVKAFIDAWDGHLGLGGPDPQMQGVVQALLTQPDAFDMMRQFYTEEILAPVVNLLIPRFGAEE
AGIRASLGLSQLLGIFTARYVIGLQSLANLPAAELIGREGPALQSTLTGPTING

Sequences:

>Translated_214_residues
MSQSQCARSSRRGPRGEVGAARAAILAAARSLFLAGDFQSVSLRAIAREAEVDTSLVSYYFGSKQSLYNEAMSLPNGPHR
IIAEVCSRTDPDHLGEALVKAFIDAWDGHLGLGGPDPQMQGVVQALLTQPDAFDMMRQFYTEEILAPVVNLLIPRFGAEE
AGIRASLGLSQLLGIFTARYVIGLQSLANLPAAELIGREGPALQSTLTGPTING
>Mature_213_residues
SQSQCARSSRRGPRGEVGAARAAILAAARSLFLAGDFQSVSLRAIAREAEVDTSLVSYYFGSKQSLYNEAMSLPNGPHRI
IAEVCSRTDPDHLGEALVKAFIDAWDGHLGLGGPDPQMQGVVQALLTQPDAFDMMRQFYTEEILAPVVNLLIPRFGAEEA
GIRASLGLSQLLGIFTARYVIGLQSLANLPAAELIGREGPALQSTLTGPTING

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22797; Mature: 22666

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSQCARSSRRGPRGEVGAARAAILAAARSLFLAGDFQSVSLRAIAREAEVDTSLVSYY
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FGSKQSLYNEAMSLPNGPHRIIAEVCSRTDPDHLGEALVKAFIDAWDGHLGLGGPDPQMQ
HCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
GVVQALLTQPDAFDMMRQFYTEEILAPVVNLLIPRFGAEEAGIRASLGLSQLLGIFTARY
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHH
VIGLQSLANLPAAELIGREGPALQSTLTGPTING
HHHHHHHHCCCHHHHHCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
SQSQCARSSRRGPRGEVGAARAAILAAARSLFLAGDFQSVSLRAIAREAEVDTSLVSYY
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
FGSKQSLYNEAMSLPNGPHRIIAEVCSRTDPDHLGEALVKAFIDAWDGHLGLGGPDPQMQ
HCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
GVVQALLTQPDAFDMMRQFYTEEILAPVVNLLIPRFGAEEAGIRASLGLSQLLGIFTARY
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHH
VIGLQSLANLPAAELIGREGPALQSTLTGPTING
HHHHHHHHCCCHHHHHCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA