Click here to switch to the map view.

The map label for this gene is ybfF [C]

Identifier: 50842579

GI number: 50842579

Start: 1192307

End: 1193125

Strand: Reverse

Name: ybfF [C]

Synonym: PPA1101

Alternate gene names: 50842579

Gene position: 1193125-1192307 (Counterclockwise)

Preceding gene: 50842581

Following gene: 50842577

Centisome position: 46.6

GC content: 58.61

Gene sequence:

>819_bases
ATGAATAAGCTTCATCTGACCACCCTCGGGAACGGCCAACAGGACGTGTATTGGTGTCACGGGGTATTTGGGCAAGGAAA
GAACTTCACCCGCGTGGCGAAGGATCTCCTTGCTACCGACCCCGACGCCTATCGCTGTATCCTCGTCGATCTGCCGAACC
ACGGCCGATCTCCCTGGACCCAAACTTTTTCTTATCGCGACATGGCCGACTCCTTGGCAGCCACCGTCAAAACCACCAGT
GGGAACCGTCCAGCCCACCTGCTGGGTCACTCGATGGGTGGCAAAGTTGTCATGCGGACGGTCCTCGACAACCCTGAGCT
AGCCCGTAGCCTCACCGTCGTCGACATGGCCCCGGTGGATTCGCGTCTCACACGCCTGGCACCTCTCGTCGACGCCATGA
AGTCGGTGAATCTGACAGCCTTGACCACCCGCCGACAAGCCGAAGAGCACATGTCCGACGGGGTGCCTGACTCGAACATC
CGGCAGTTCCTCTTGCAAAACTTGCGCCATGAAACCGGCAATCATGAACGCTGGTATTGGCAAATGAATCTCGATCTATT
GGGCAATGGACTGTCCGATATCGGTTCCTGGCCGCCGGTTACCTCGATCTGGGAAGGGCCAGCGCTCTGGATCACCGCCG
AGCAATCGGACTATGTCGGCCCCGACCATTCCCAAGCCATGCACGAACTTTTCCCCCAAGTGCGCCGAATCCGTATTAAG
AATTCCGGCCACTGGGTGCATTCAGACCAGCCGGGAGTCTTCGTGCAAGTGCTAGCGGCCTTCCTATCACGGTGCCAGGG
GCCTCTCACCCCTCGCTAA

Upstream 100 bases:

>100_bases
CCCCACATGTCGTTGCCTGGCCACATGAACCATCGATGTTCTCCAGGTCCCCGGTCGAGGAACGTCGTCACTGGCACACC
GGGTGTTGGAGATCTCGCCC

Downstream 100 bases:

>100_bases
GGCTCAGCCCATCACAACCGAGCCAATCTTGGTGTCGACCTTTGGAGTAAGGCCATCGTCAGCGAGCCCCTTATGAGCGA
TGTCAGAGATGCTCCCAGCA

Product: putative esterase/lipase YbfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MNKLHLTTLGNGQQDVYWCHGVFGQGKNFTRVAKDLLATDPDAYRCILVDLPNHGRSPWTQTFSYRDMADSLAATVKTTS
GNRPAHLLGHSMGGKVVMRTVLDNPELARSLTVVDMAPVDSRLTRLAPLVDAMKSVNLTALTTRRQAEEHMSDGVPDSNI
RQFLLQNLRHETGNHERWYWQMNLDLLGNGLSDIGSWPPVTSIWEGPALWITAEQSDYVGPDHSQAMHELFPQVRRIRIK
NSGHWVHSDQPGVFVQVLAAFLSRCQGPLTPR

Sequences:

>Translated_272_residues
MNKLHLTTLGNGQQDVYWCHGVFGQGKNFTRVAKDLLATDPDAYRCILVDLPNHGRSPWTQTFSYRDMADSLAATVKTTS
GNRPAHLLGHSMGGKVVMRTVLDNPELARSLTVVDMAPVDSRLTRLAPLVDAMKSVNLTALTTRRQAEEHMSDGVPDSNI
RQFLLQNLRHETGNHERWYWQMNLDLLGNGLSDIGSWPPVTSIWEGPALWITAEQSDYVGPDHSQAMHELFPQVRRIRIK
NSGHWVHSDQPGVFVQVLAAFLSRCQGPLTPR
>Mature_272_residues
MNKLHLTTLGNGQQDVYWCHGVFGQGKNFTRVAKDLLATDPDAYRCILVDLPNHGRSPWTQTFSYRDMADSLAATVKTTS
GNRPAHLLGHSMGGKVVMRTVLDNPELARSLTVVDMAPVDSRLTRLAPLVDAMKSVNLTALTTRRQAEEHMSDGVPDSNI
RQFLLQNLRHETGNHERWYWQMNLDLLGNGLSDIGSWPPVTSIWEGPALWITAEQSDYVGPDHSQAMHELFPQVRRIRIK
NSGHWVHSDQPGVFVQVLAAFLSRCQGPLTPR

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI23200008, Length=252, Percent_Identity=35.3174603174603, Blast_Score=148, Evalue=6e-36,
Organism=Homo sapiens, GI23200012, Length=252, Percent_Identity=35.3174603174603, Blast_Score=148, Evalue=6e-36,
Organism=Homo sapiens, GI223941839, Length=247, Percent_Identity=29.1497975708502, Blast_Score=98, Evalue=7e-21,
Organism=Escherichia coli, GI1786902, Length=248, Percent_Identity=29.8387096774194, Blast_Score=115, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17508535, Length=253, Percent_Identity=35.5731225296443, Blast_Score=144, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17507063, Length=253, Percent_Identity=28.0632411067194, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6321468, Length=275, Percent_Identity=30.1818181818182, Blast_Score=108, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24640348, Length=262, Percent_Identity=28.2442748091603, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24646055, Length=237, Percent_Identity=27.4261603375527, Blast_Score=75, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR012908 [H]

Pfam domain/function: PF00561 Abhydrolase_1; PF07819 PGAP1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 30468; Mature: 30468

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLHLTTLGNGQQDVYWCHGVFGQGKNFTRVAKDLLATDPDAYRCILVDLPNHGRSPWT
CCCEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHH
QTFSYRDMADSLAATVKTTSGNRPAHLLGHSMGGKVVMRTVLDNPELARSLTVVDMAPVD
HCCCHHHHHHHHHHEEEECCCCCCHHHHCCCCCCHHHHHHHHCCHHHHHEEEEEEECCHH
SRLTRLAPLVDAMKSVNLTALTTRRQAEEHMSDGVPDSNIRQFLLQNLRHETGNHERWYW
HHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEE
QMNLDLLGNGLSDIGSWPPVTSIWEGPALWITAEQSDYVGPDHSQAMHELFPQVRRIRIK
EEEHHHHCCCHHHHCCCCCCCHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEC
NSGHWVHSDQPGVFVQVLAAFLSRCQGPLTPR
CCCCEEECCCCCHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNKLHLTTLGNGQQDVYWCHGVFGQGKNFTRVAKDLLATDPDAYRCILVDLPNHGRSPWT
CCCEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHH
QTFSYRDMADSLAATVKTTSGNRPAHLLGHSMGGKVVMRTVLDNPELARSLTVVDMAPVD
HCCCHHHHHHHHHHEEEECCCCCCHHHHCCCCCCHHHHHHHHCCHHHHHEEEEEEECCHH
SRLTRLAPLVDAMKSVNLTALTTRRQAEEHMSDGVPDSNIRQFLLQNLRHETGNHERWYW
HHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEE
QMNLDLLGNGLSDIGSWPPVTSIWEGPALWITAEQSDYVGPDHSQAMHELFPQVRRIRIK
EEEHHHHCCCHHHHCCCCCCCHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHEEEEC
NSGHWVHSDQPGVFVQVLAAFLSRCQGPLTPR
CCCCEEECCCCCHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]