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The map label for this gene is 50842563

Identifier: 50842563

GI number: 50842563

Start: 1178169

End: 1178882

Strand: Direct

Name: 50842563

Synonym: PPA1085

Alternate gene names: NA

Gene position: 1178169-1178882 (Clockwise)

Preceding gene: 50842562

Following gene: 50842564

Centisome position: 46.02

GC content: 57.14

Gene sequence:

>714_bases
ATGCCAAGGTCTGTCCGCACTATCGGACAGGTCATGAAGACTCTCAAACCGGATTTTCCCGATCTGAGCATTTCCAAGAT
CCGATTTCTAGAGTCCGAGGGCCTGTTGTCCCCTGAGAGGGCACCATCGGGATACCGCAAGTACTCCGATTCTGACGTCG
AGAGATTGCGGTATATCCTGACCTGCCAGCGTGACCACTTCCAACCATTGCGGGTCATCAGGGACCACTTGGAAATGATG
GACCGAGGCGAGGAGCCCCCGGTTTCCGAGGCACCTCCTTTGCCCACTGAGAACGAGGGGACTCCTGATCCTCAGCCTCA
GCCGACAGGTCAAGGAATTGTCCGGACCCGTGGCCCTATCCGGATGAACCGACGTGAACTCATCCGTGCCTCTGGCATTA
CCGAGGCCATGCTCATGGAGCTTGAGCGTCACCAGCTGGTACGGCCCAAGCGGGGAGCCTCGTACTTCGGTCAAGAGGCC
CTCGTTATCTGTGTCGCAGCACGTCGATTGGCGGCTTACGGCATGGATACTCGTCACATGCGTGCCATCAGGCAGGCTGC
GGAGCATGAAGCCGGACTTATAGAACAGGCCCTTATCCCACACGCGCGGCATCCTGAGCAGGCTTCAAAGATTGCTGCTG
AGACGACCAAGGTAATGATGCACGCTCATACCGCCATGGTCTACGACATGTTGGAACATTGGTCGGGTAACTGA

Upstream 100 bases:

>100_bases
CGGTCCTACGCGATGGCGACGAGGTGCAGATCGGAAAGTTCCGGATGACCTACCACACCGGTGGTACGGCATCGGGGACG
AGTGGGGCCGGTCGCGTCTG

Downstream 100 bases:

>100_bases
TCGACATGGGGTCCGCGCTAGGCTGATCGCATGGTCTTGCTCGAGGTTGCCGAGATTCGGACCAAGCCTGTCTCCGGAGC
GGCGGTGCTGCTGCTCCGTG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MPRSVRTIGQVMKTLKPDFPDLSISKIRFLESEGLLSPERAPSGYRKYSDSDVERLRYILTCQRDHFQPLRVIRDHLEMM
DRGEEPPVSEAPPLPTENEGTPDPQPQPTGQGIVRTRGPIRMNRRELIRASGITEAMLMELERHQLVRPKRGASYFGQEA
LVICVAARRLAAYGMDTRHMRAIRQAAEHEAGLIEQALIPHARHPEQASKIAAETTKVMMHAHTAMVYDMLEHWSGN

Sequences:

>Translated_237_residues
MPRSVRTIGQVMKTLKPDFPDLSISKIRFLESEGLLSPERAPSGYRKYSDSDVERLRYILTCQRDHFQPLRVIRDHLEMM
DRGEEPPVSEAPPLPTENEGTPDPQPQPTGQGIVRTRGPIRMNRRELIRASGITEAMLMELERHQLVRPKRGASYFGQEA
LVICVAARRLAAYGMDTRHMRAIRQAAEHEAGLIEQALIPHARHPEQASKIAAETTKVMMHAHTAMVYDMLEHWSGN
>Mature_236_residues
PRSVRTIGQVMKTLKPDFPDLSISKIRFLESEGLLSPERAPSGYRKYSDSDVERLRYILTCQRDHFQPLRVIRDHLEMMD
RGEEPPVSEAPPLPTENEGTPDPQPQPTGQGIVRTRGPIRMNRRELIRASGITEAMLMELERHQLVRPKRGASYFGQEAL
VICVAARRLAAYGMDTRHMRAIRQAAEHEAGLIEQALIPHARHPEQASKIAAETTKVMMHAHTAMVYDMLEHWSGN

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 26934; Mature: 26803

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSVRTIGQVMKTLKPDFPDLSISKIRFLESEGLLSPERAPSGYRKYSDSDVERLRYIL
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHH
TCQRDHFQPLRVIRDHLEMMDRGEEPPVSEAPPLPTENEGTPDPQPQPTGQGIVRTRGPI
HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
RMNRRELIRASGITEAMLMELERHQLVRPKRGASYFGQEALVICVAARRLAAYGMDTRHM
CCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
RAIRQAAEHEAGLIEQALIPHARHPEQASKIAAETTKVMMHAHTAMVYDMLEHWSGN
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PRSVRTIGQVMKTLKPDFPDLSISKIRFLESEGLLSPERAPSGYRKYSDSDVERLRYIL
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHH
TCQRDHFQPLRVIRDHLEMMDRGEEPPVSEAPPLPTENEGTPDPQPQPTGQGIVRTRGPI
HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
RMNRRELIRASGITEAMLMELERHQLVRPKRGASYFGQEALVICVAARRLAAYGMDTRHM
CCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
RAIRQAAEHEAGLIEQALIPHARHPEQASKIAAETTKVMMHAHTAMVYDMLEHWSGN
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]