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The map label for this gene is yggS [C]

Identifier: 50842463

GI number: 50842463

Start: 1062862

End: 1063578

Strand: Direct

Name: yggS [C]

Synonym: PPA0978

Alternate gene names: 50842463

Gene position: 1062862-1063578 (Clockwise)

Preceding gene: 50842462

Following gene: 50842464

Centisome position: 41.51

GC content: 57.18

Gene sequence:

>717_bases
ATGAGTATGGCTGACAACCTAGCGGCGGTGCGTACCCGCATTGATGATGCCTGCCGAGCTTGTGATCGAAATCCCGGCGA
GGTGTCGTTGCTACCAGTCTCCAAAACCAAGCCTCCCAGCATGGTCGATGAGGCGTATCGGGCTGGCTACCGGCTTTTCG
GCGAAAACAAGGTGCAAGATGCACTCGCGAAATCTGAACTCATGGATGCCAATCACCCCGGGCTGGAATGGTCCATCATC
GGCGGCTTGCAGACCAACAAGGCCAAATACGTGGCCCGCTTCGCCACCGAGTTTCAAGCCCTCGATTCGCTCAAGATTGC
CCATGAACTCGACAAGAGGTTACAAAAGGAAGGACGTCAACTACGGGTATTGGTCCAGGTGAATTCCTCGGCTGAGCCTC
AAAAATCTGGGATCGCTCCCGAGGAAGCTGTCGACTTCGCCCGTGAACTGGCCGCCTTTGATTCTCTCGATGTGCGCGGG
CTCATGACGGTGGCCCTCAATAGTTCTGACCAGCGGGCCGTGGCCGACTGTTTTGACCTCGTTGTCGCAACTCAAGAGAA
GCTGCGCCAGGAGGCGGGCGATACTAGCGACTGGTCCGAATTGTCCATGGGAATGTCAGGGGATCTGGAGATCGCCATTG
CTCATGGTTCCACCCAGGTACGTATCGGCACTGACATCTTCGGCGCTCGCGATCCGGCACGGACATGGCGTCCGTAA

Upstream 100 bases:

>100_bases
CGTGGTGCTGACGGCGGCCTCCGTCATCAGTTTATGCGCCCGTTGGCCCTAATCCCTTGCCTCCAGAGTAGATTCGTTGG
CGTCTTGTAAGGAGTTTCCC

Downstream 100 bases:

>100_bases
GTTCAGTCGTCTATCGTTATCGATAAGTCCGTACCGCACCACTGCAGGGGAAGGCACGTGGTACCGGGAGGACGACCGTG
GAAACGACACAGCTGGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSMADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSII
GGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG
LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPARTWRP

Sequences:

>Translated_238_residues
MSMADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSII
GGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG
LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPARTWRP
>Mature_237_residues
SMADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSIIG
GLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGL
MTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPARTWRP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=243, Percent_Identity=36.6255144032922, Blast_Score=128, Evalue=4e-30,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=44.206008583691, Blast_Score=151, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI17533025, Length=211, Percent_Identity=34.1232227488152, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=229, Percent_Identity=37.5545851528384, Blast_Score=120, Evalue=2e-28,
Organism=Drosophila melanogaster, GI45550861, Length=239, Percent_Identity=35.1464435146443, Blast_Score=106, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26068; Mature: 25936

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQD
CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCHHCCCCCHHHH
ALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQ
HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGLMTVALNSSDQRAVADCFDL
EEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
VVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPARTWRP
HHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCEEEEECCHHCCCCCCCCCCCC
>Mature Secondary Structure 
SMADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQD
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCHHCCCCCHHHH
ALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQ
HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGLMTVALNSSDQRAVADCFDL
EEEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH
VVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPARTWRP
HHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEECCCEEEEECCHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]