Click here to switch to the map view.

The map label for this gene is ybbM [C]

Identifier: 50842440

GI number: 50842440

Start: 1038998

End: 1039720

Strand: Reverse

Name: ybbM [C]

Synonym: PPA0956

Alternate gene names: 50842440

Gene position: 1039720-1038998 (Counterclockwise)

Preceding gene: 50842444

Following gene: 50842437

Centisome position: 40.61

GC content: 60.17

Gene sequence:

>723_bases
ATGGTGCTGCTCGTCGCACTGGCCGTCATCGCTTCCCTTCTTGGACGTCTGGGTGTCGCCAAGGCTTCCGTTATCGCCTC
TGTGCGGGCAGTGGTGCAGCTCGGAATCGTCTCCGTCATCCTTGCCTATGCTCTGGCCCATATGTGGGCGGCATGTCTAT
TCACGGTGCTCATGTTCGCCATCGCTGTGCATACGACTGCGAATCGTTCCGGGGTTTCTGCAGCATGGATGTGGGCGGCA
ATAGCCATGATCGCCGGCGTCCTTCCGGTGCTTCTTATCATCTTTGCGACTGGCTGTGCCCCGTTGAGTCCGGCGTCCCT
GATCCCAGTGGCTGGCATCATCATCGGCAACATTATGAGTGGTCACACCTTGGCCTGCCGTCGTTTTTTCGCCGATTTGC
GCGAGGGAATCGGCATCTTCGAGGCGGGCCTAGCTGTCGGTTTTCCACGTCGTGACGCCATTGCGCTGGTTACCGAACCC
AGCGTCACCGAATCGGTACTGCCGACTGTCGACCGCACCGCGACCGTCGGTCTGGTGACCTTGCCGGGCGCCTTCGTCGG
CGTGCTCTTAGGCGGAGGCTCAGCCCTGCAAGCAGGTGCTGCACAAGCCCTCGTTCTCATCGGCATTCTGGCTGGCCAGG
CGGTAACCGTCATCGTCGCTCACGAACTCATTAAAGGGGCCAAGCTGCTACCTGAAGATCTCACAGGCAAGCTTCACCCG
TGA

Upstream 100 bases:

>100_bases
CAGCCATACCTACGATCCTACCCATGTGTGGCCGGAGCACCCGAATGGTGCAAAACTGTCCGCCGTGACCGTAAACCCTA
CTTGGCAGCTCGGGTTAGCA

Downstream 100 bases:

>100_bases
GTAAATTCATGCCGTCTTGTCAAAAGCCCCTACCCATACCTCTAGGCAGACGGCGTCGGTCCCATCCCAACAGCTCGGCG
GCATGGGAAAAAGCGAATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MVLLVALAVIASLLGRLGVAKASVIASVRAVVQLGIVSVILAYALAHMWAACLFTVLMFAIAVHTTANRSGVSAAWMWAA
IAMIAGVLPVLLIIFATGCAPLSPASLIPVAGIIIGNIMSGHTLACRRFFADLREGIGIFEAGLAVGFPRRDAIALVTEP
SVTESVLPTVDRTATVGLVTLPGAFVGVLLGGGSALQAGAAQALVLIGILAGQAVTVIVAHELIKGAKLLPEDLTGKLHP

Sequences:

>Translated_240_residues
MVLLVALAVIASLLGRLGVAKASVIASVRAVVQLGIVSVILAYALAHMWAACLFTVLMFAIAVHTTANRSGVSAAWMWAA
IAMIAGVLPVLLIIFATGCAPLSPASLIPVAGIIIGNIMSGHTLACRRFFADLREGIGIFEAGLAVGFPRRDAIALVTEP
SVTESVLPTVDRTATVGLVTLPGAFVGVLLGGGSALQAGAAQALVLIGILAGQAVTVIVAHELIKGAKLLPEDLTGKLHP
>Mature_240_residues
MVLLVALAVIASLLGRLGVAKASVIASVRAVVQLGIVSVILAYALAHMWAACLFTVLMFAIAVHTTANRSGVSAAWMWAA
IAMIAGVLPVLLIIFATGCAPLSPASLIPVAGIIIGNIMSGHTLACRRFFADLREGIGIFEAGLAVGFPRRDAIALVTEP
SVTESVLPTVDRTATVGLVTLPGAFVGVLLGGGSALQAGAAQALVLIGILAGQAVTVIVAHELIKGAKLLPEDLTGKLHP

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=228, Percent_Identity=26.7543859649123, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 24378; Mature: 24378

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLLVALAVIASLLGRLGVAKASVIASVRAVVQLGIVSVILAYALAHMWAACLFTVLMFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAVHTTANRSGVSAAWMWAAIAMIAGVLPVLLIIFATGCAPLSPASLIPVAGIIIGNIMS
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
GHTLACRRFFADLREGIGIFEAGLAVGFPRRDAIALVTEPSVTESVLPTVDRTATVGLVT
CHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCCCCHHHEEEEE
LPGAFVGVLLGGGSALQAGAAQALVLIGILAGQAVTVIVAHELIKGAKLLPEDLTGKLHP
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure
MVLLVALAVIASLLGRLGVAKASVIASVRAVVQLGIVSVILAYALAHMWAACLFTVLMFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAVHTTANRSGVSAAWMWAAIAMIAGVLPVLLIIFATGCAPLSPASLIPVAGIIIGNIMS
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
GHTLACRRFFADLREGIGIFEAGLAVGFPRRDAIALVTEPSVTESVLPTVDRTATVGLVT
CHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCCCCHHHEEEEE
LPGAFVGVLLGGGSALQAGAAQALVLIGILAGQAVTVIVAHELIKGAKLLPEDLTGKLHP
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]