Click here to switch to the map view.

The map label for this gene is dgoR [H]

Identifier: 50842228

GI number: 50842228

Start: 812358

End: 813188

Strand: Direct

Name: dgoR [H]

Synonym: PPA0741

Alternate gene names: 50842228

Gene position: 812358-813188 (Clockwise)

Preceding gene: 50842227

Following gene: 50842236

Centisome position: 31.73

GC content: 57.76

Gene sequence:

>831_bases
GTGCTGCTAAAGTGCTGTTGCACGGTCCCAAAGATGCACTTTACTGATCGCTCCCTCAGGGTATCGAGCCTTGTCGGCTT
GGCATGCGTTATCGTTCCTGTCATGCCTCAGGAATTCCTTGCTTCATCGGTTGCCAGTCGTCTAGGTGCTCGCATTGTCG
ACGGTGACTTGCAAGCCGGTGACGTACTGCGGTTGGGGGACATTGAGCAGGAATCGGCAGCGTCCCGTTCCGTTTGCCGT
GAAGCAGTCAAGATCCTCGAATCCCTAAACCTGGTACGTTCCCGGCGTCACGTCGGCGTGACGGTCCTACCTTCCAACCA
ATGGGACGTGTTGTCACCCAAGGTGGTGCACTGGCACATGTCTGGCAACAAGCGTGAGCAGGCGATGAGCTGGACGAACG
AATTGCGGATAGCCTTGGAACCCACGGCTGCTCGACTTGCAGCTGAGCGTGCCGACGGCGCAGATCTCAAGGGATTACAA
GACGCTGTCTCCGGTATGACCGAGGCGATCCGAAATGATGACTCGACTAGTTTCGCCAAACACGACCACGCTTTTCACCG
GAGCCTTTTGGTCGCTACTCCCAATCCGCTGTACATCGCCCATGCTCCGATGTTGCTTAGCTACTTTGCTGAACAACACG
ATGACCGCAACCTTACAAGTGAAGACGGGGCCGATCTCGTCCAGCACCGCGACATTCTTGACGCTATCACGATGAGTGAT
CCGGACGCGGCTGAGCAGTCCACCCGGGTCCTCGTCCTGGGGCTCGGACGAGTATTGCCTCAGCCCACGGTGGCGAGCGG
TCCGGCCGGTGTAGCACACCAAACCGGGTAA

Upstream 100 bases:

>100_bases
ATGAGTTCCTCAATGCATGCAGCATCAAAATAACGGGGAACGAGGTGAGTCGAGTCAATGCAGAAGAAATCATATTTTTG
TGGCCTGGGGCAAGTTATTA

Downstream 100 bases:

>100_bases
ATACATCAAGCTGGCCGGGTCCGATCTGGACCGGGCCCGGCCAGCTGTGCGTCAGATCAGTCTTCGAATGCCTCCGGAGG
CGGGCAAGAGCACACCAGGT

Product: putative GntR-famly transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MLLKCCCTVPKMHFTDRSLRVSSLVGLACVIVPVMPQEFLASSVASRLGARIVDGDLQAGDVLRLGDIEQESAASRSVCR
EAVKILESLNLVRSRRHVGVTVLPSNQWDVLSPKVVHWHMSGNKREQAMSWTNELRIALEPTAARLAAERADGADLKGLQ
DAVSGMTEAIRNDDSTSFAKHDHAFHRSLLVATPNPLYIAHAPMLLSYFAEQHDDRNLTSEDGADLVQHRDILDAITMSD
PDAAEQSTRVLVLGLGRVLPQPTVASGPAGVAHQTG

Sequences:

>Translated_276_residues
MLLKCCCTVPKMHFTDRSLRVSSLVGLACVIVPVMPQEFLASSVASRLGARIVDGDLQAGDVLRLGDIEQESAASRSVCR
EAVKILESLNLVRSRRHVGVTVLPSNQWDVLSPKVVHWHMSGNKREQAMSWTNELRIALEPTAARLAAERADGADLKGLQ
DAVSGMTEAIRNDDSTSFAKHDHAFHRSLLVATPNPLYIAHAPMLLSYFAEQHDDRNLTSEDGADLVQHRDILDAITMSD
PDAAEQSTRVLVLGLGRVLPQPTVASGPAGVAHQTG
>Mature_276_residues
MLLKCCCTVPKMHFTDRSLRVSSLVGLACVIVPVMPQEFLASSVASRLGARIVDGDLQAGDVLRLGDIEQESAASRSVCR
EAVKILESLNLVRSRRHVGVTVLPSNQWDVLSPKVVHWHMSGNKREQAMSWTNELRIALEPTAARLAAERADGADLKGLQ
DAVSGMTEAIRNDDSTSFAKHDHAFHRSLLVATPNPLYIAHAPMLLSYFAEQHDDRNLTSEDGADLVQHRDILDAITMSD
PDAAEQSTRVLVLGLGRVLPQPTVASGPAGVAHQTG

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=223, Percent_Identity=30.9417040358744, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI48994961, Length=218, Percent_Identity=28.8990825688073, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 29922; Mature: 29922

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLKCCCTVPKMHFTDRSLRVSSLVGLACVIVPVMPQEFLASSVASRLGARIVDGDLQAG
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEECCCCCCC
DVLRLGDIEQESAASRSVCREAVKILESLNLVRSRRHVGVTVLPSNQWDVLSPKVVHWHM
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEEC
SGNKREQAMSWTNELRIALEPTAARLAAERADGADLKGLQDAVSGMTEAIRNDDSTSFAK
CCCCHHHHHHHHHHEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
HDHAFHRSLLVATPNPLYIAHAPMLLSYFAEQHDDRNLTSEDGADLVQHRDILDAITMSD
HHHHHHHEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDAAEQSTRVLVLGLGRVLPQPTVASGPAGVAHQTG
CCCHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLLKCCCTVPKMHFTDRSLRVSSLVGLACVIVPVMPQEFLASSVASRLGARIVDGDLQAG
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEECCCCCCC
DVLRLGDIEQESAASRSVCREAVKILESLNLVRSRRHVGVTVLPSNQWDVLSPKVVHWHM
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEEC
SGNKREQAMSWTNELRIALEPTAARLAAERADGADLKGLQDAVSGMTEAIRNDDSTSFAK
CCCCHHHHHHHHHHEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
HDHAFHRSLLVATPNPLYIAHAPMLLSYFAEQHDDRNLTSEDGADLVQHRDILDAITMSD
HHHHHHHEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDAAEQSTRVLVLGLGRVLPQPTVASGPAGVAHQTG
CCCHHHCCEEEEEECHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]