Click here to switch to the map view.

The map label for this gene is yqfA [C]

Identifier: 50842051

GI number: 50842051

Start: 625632

End: 626303

Strand: Direct

Name: yqfA [C]

Synonym: PPA0565

Alternate gene names: 50842051

Gene position: 625632-626303 (Clockwise)

Preceding gene: 50842049

Following gene: 50842052

Centisome position: 24.44

GC content: 58.48

Gene sequence:

>672_bases
ATGGCGACCGGGTGCAGCAGCAAGACCAAGAATCGTAGTTCGGTGCTTCCTAAACCGCGGCTGCGTGGTTGGGTTCACAC
CGTGATGGCCCCGCTGATCTTGCTCGCCGGAGTTGGCCTCATGATTGCTACGCCGACTTGGGGAAACCGATTTGCCGTCG
GGGTGTGGATGCTTACCGGCCTAGAGCTGTTCGGGAATTCAGCGGTCTATCACCGAGTGCCATGGGGTGCGAAAGTCAAG
GATGTTTTGCGACGCATCGATCACGCCAACATCGCCGTGTTTATTGCTGGAACGTATACCCCGTTGGCTGTCTCCCTGGC
GACCGGCGCATCTCGGGTGATCTTATTGGCGATTATTTGGGCCTGCGCGCTGCTCGGGGTCGCGTTCCGATTCGTATGGA
ACGGCGTGCCCCGATGGGCCTCAACGATCCTCTACGTCGTCATGGGATGGACAGCGCTGTGGTGGCTCCCTCAATTCTGG
CGCACATGCGGGCCGGCAGTCGTCATTCTTATCCTCATTGGCGGGGTGTTTTACACCGTCGGAGCAATCTCCTATGCCCG
TCAGAAACCCAATCCTTCACCTACCTGGTTTGGGTTCCACGAGGTTTTCCACAGTTGCACGGCGGTGGCAGCGATCTGTC
ACGCCGTTGCTATTGGGCTTGCCGTCATCTGA

Upstream 100 bases:

>100_bases
CGTTATGAGGCGAGATCGCGTCGTGGGTATAGGGCAAGGTAGGCTGGAAAAAGAAACCTACCGAACCGTAGGTTTGCAGT
AGGTGAGGGGAGGACGACGC

Downstream 100 bases:

>100_bases
CCAGCTGGTGAACTCTGAGCGAATGGGAGAACCACCCGCTCCGATGCCACCACGCTGGTTCTACATTTGATGCTAGAGGG
GCCGCTTTCGACGCCTCGAT

Product: putative hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MATGCSSKTKNRSSVLPKPRLRGWVHTVMAPLILLAGVGLMIATPTWGNRFAVGVWMLTGLELFGNSAVYHRVPWGAKVK
DVLRRIDHANIAVFIAGTYTPLAVSLATGASRVILLAIIWACALLGVAFRFVWNGVPRWASTILYVVMGWTALWWLPQFW
RTCGPAVVILILIGGVFYTVGAISYARQKPNPSPTWFGFHEVFHSCTAVAAICHAVAIGLAVI

Sequences:

>Translated_223_residues
MATGCSSKTKNRSSVLPKPRLRGWVHTVMAPLILLAGVGLMIATPTWGNRFAVGVWMLTGLELFGNSAVYHRVPWGAKVK
DVLRRIDHANIAVFIAGTYTPLAVSLATGASRVILLAIIWACALLGVAFRFVWNGVPRWASTILYVVMGWTALWWLPQFW
RTCGPAVVILILIGGVFYTVGAISYARQKPNPSPTWFGFHEVFHSCTAVAAICHAVAIGLAVI
>Mature_222_residues
ATGCSSKTKNRSSVLPKPRLRGWVHTVMAPLILLAGVGLMIATPTWGNRFAVGVWMLTGLELFGNSAVYHRVPWGAKVKD
VLRRIDHANIAVFIAGTYTPLAVSLATGASRVILLAIIWACALLGVAFRFVWNGVPRWASTILYVVMGWTALWWLPQFWR
TCGPAVVILILIGGVFYTVGAISYARQKPNPSPTWFGFHEVFHSCTAVAAICHAVAIGLAVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=162, Percent_Identity=32.7160493827161, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24256; Mature: 24125

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: PS00099 THIOLASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGCSSKTKNRSSVLPKPRLRGWVHTVMAPLILLAGVGLMIATPTWGNRFAVGVWMLTG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHH
LELFGNSAVYHRVPWGAKVKDVLRRIDHANIAVFIAGTYTPLAVSLATGASRVILLAIIW
HHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHH
ACALLGVAFRFVWNGVPRWASTILYVVMGWTALWWLPQFWRTCGPAVVILILIGGVFYTV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAISYARQKPNPSPTWFGFHEVFHSCTAVAAICHAVAIGLAVI
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATGCSSKTKNRSSVLPKPRLRGWVHTVMAPLILLAGVGLMIATPTWGNRFAVGVWMLTG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHHHH
LELFGNSAVYHRVPWGAKVKDVLRRIDHANIAVFIAGTYTPLAVSLATGASRVILLAIIW
HHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHH
ACALLGVAFRFVWNGVPRWASTILYVVMGWTALWWLPQFWRTCGPAVVILILIGGVFYTV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAISYARQKPNPSPTWFGFHEVFHSCTAVAAICHAVAIGLAVI
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]