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The map label for this gene is perM [C]

Identifier: 50842045

GI number: 50842045

Start: 619028

End: 620254

Strand: Direct

Name: perM [C]

Synonym: PPA0559

Alternate gene names: 50842045

Gene position: 619028-620254 (Clockwise)

Preceding gene: 50842043

Following gene: 50842046

Centisome position: 24.18

GC content: 59.82

Gene sequence:

>1227_bases
ATGAAGCTCTTTAGCTCGGGTAGGAAGACCCCCACGTCGTCACCGGCATCTTCGCACGCCGGGGCTATGGATGAGACGGT
TGGCGTCACCTCCACGTCCGAGGCCGCTAACGTTGCTACTCAGCCCGTCCCTACTCCCGTCGAAGACGTCCCTAATGGTG
TGCGCACCGCTGCCGGATGGTGTTGGCGGATGATCGTTATTGCGGCCTTCATCTATGGCCTCTACCAAGTGCTCCACGCG
GCTTCTGAGGTGTCCGTGCCAGTCGCGGTGGCTCTTATGCTTACTGCTGCCATGTGGCCACTAGCCAACTGGTTGTCGCG
ACATCACATCCATCGCGGTATCGCGTCGGGAATCTGCTTATTGCTCCTTGTCATCCTTGTTGGTGGGGTGTTCACTCTCG
TCGGAGCCCAGATCGCTCTGCAGTGGCGTCAGTTGGGTGACCAAAGTGTCGCTAGCTTCAAACAGGCTCTGCAGTGGCTG
GCCAAGAGCCCCTTGCACACCAATGAGGCTCAACTTACCCACCTCATGCAGAAGGCCGAGGCAGCCATGGCCGGCTCTCA
AGGGCGCATCGCCTCGACTGCTGCTGCTGCCGGTTCCCAGATCGGACGGTTCGGCGCCGGTCTTGTAATGGCGCTGTTTG
CAACGTTCTTTTTCGTCTACGAGGGCGACAAATTGGCCGAGAAATCGGCGGTTTTGATCCCGCGCGAGCATCGTGCCGCA
ATCCTCGACGCCGCGAAGCGCGGCTGGGTTGCGCTGGTCGCCTATGTGCGCGCTGCGGTCATCGTCGCATTTGTCGATGG
TCTGGGCGCCGGGATCGGAGCCGCTATTATCGGGTCGTCAATGTCAGTGGCGATTGGCGCTCTGACATTCATCTTGGCCT
TCGTTCCCATTGTCGGTGCGCTGACGGCTGGTGTCGTCGCCGTCGGCGTGGTGTTGGTGACGCTTGGATTCTTCAAGGCC
TTCATCATGCTTATCGTTTTCGTGGCCGTCATGCAGATTGAGGGACACGTCCTGCAGCCCTTCCTGTTGGGCAAGGCCGT
CTCCATTCATCCGCTCATCGTGCTGCTCGGTATTGCTGTCGGTGCCATCATCTCCGGCATCGTGGGCGCTCTGTTCGCCA
TTCCGATCGTTGCCTTTGGGGTAGCCTTCATCAAGGCTTTGAACCCCGAGACCCCGGCGAACGAAGTCCCGCCAAACCAC
GATGACCTGGCTGCTGAGCACACGTGA

Upstream 100 bases:

>100_bases
GTGGCCTCCAAGAGAATACATACGGATGACATGCATGACGCTACCCTGTGATCGCGCCTTTTGAGACCGCAGCCCCACCA
CGCTATTCTGGAAGGAACCC

Downstream 100 bases:

>100_bases
ACATTAACCTGTTGGGCTCCCCCGTAAAGTTGATGTCATGAGCGCTGACATCACCGCTATCCTCGAAGACCTTGCTGCCG
GGAGGATAGACACCGCCGAG

Product: membrane spanning protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MKLFSSGRKTPTSSPASSHAGAMDETVGVTSTSEAANVATQPVPTPVEDVPNGVRTAAGWCWRMIVIAAFIYGLYQVLHA
ASEVSVPVAVALMLTAAMWPLANWLSRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWL
AKSPLHTNEAQLTHLMQKAEAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAA
ILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVLVTLGFFKA
FIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNH
DDLAAEHT

Sequences:

>Translated_408_residues
MKLFSSGRKTPTSSPASSHAGAMDETVGVTSTSEAANVATQPVPTPVEDVPNGVRTAAGWCWRMIVIAAFIYGLYQVLHA
ASEVSVPVAVALMLTAAMWPLANWLSRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWL
AKSPLHTNEAQLTHLMQKAEAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAA
ILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVLVTLGFFKA
FIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNH
DDLAAEHT
>Mature_408_residues
MKLFSSGRKTPTSSPASSHAGAMDETVGVTSTSEAANVATQPVPTPVEDVPNGVRTAAGWCWRMIVIAAFIYGLYQVLHA
ASEVSVPVAVALMLTAAMWPLANWLSRHHIHRGIASGICLLLLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWL
AKSPLHTNEAQLTHLMQKAEAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKSAVLIPREHRAA
ILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFILAFVPIVGALTAGVVAVGVVLVTLGFFKA
FIMLIVFVAVMQIEGHVLQPFLLGKAVSIHPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNH
DDLAAEHT

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 42383; Mature: 42383

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]