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The map label for this gene is yabD [H]

Identifier: 50842009

GI number: 50842009

Start: 579255

End: 580163

Strand: Direct

Name: yabD [H]

Synonym: PPA0525

Alternate gene names: 50842009

Gene position: 579255-580163 (Clockwise)

Preceding gene: 50842008

Following gene: 50842010

Centisome position: 22.62

GC content: 61.72

Gene sequence:

>909_bases
GTGAACGAAGCCATTCGTGAGGTGCTGGGCGAGGCCGGAGCACCACCCCTGCCCGAGCCGCTGGCGGGCTCCATTGTGGA
CTCTCACACTCACTTGGACACCGTGCAGGACGTTGTCGGCATCGAACCCGCTATTAGTTTGGCGGCCGCCCGTGAGGTCG
GGGTGACCCGCATCGCTCAAATTGGGTGTGACGTCGCGGGGTCCGAGTTCGCCGAGGAGTTGGCGCGGACGCACAAGAAC
GTCATCGCTGCGGTCGCCATCCATCCCAACGACGCTGCCCGTCTCGGCAGGGAAAAGATTGGTGATGCCTTGAAACGGAT
TGACGAGCTCGCCAGCGTCGGCAACCACGTCCGTGCTATCGGTGAGACCGGTATTGACCATTTCGGCACTACCGATGCCG
ACGGACAGGCTTTGCAGCGCGAGGTCTTTGCCGCCCATATCGCTATGGCCCACGCCCATGATCTCACCTTGGCAATCCAC
ATGCGCGACGCCCGTAATGGCGGTGAGGGTGACGAGCCGCCCTCTGGTCGTCAGGCTCACGATGACGTTGTTGACGTCCT
TAACTCAGAAGGTTGGCCCGATCGGATTATCATGCACTGCTACTCCGGTGATGCTGACCTGGCCCGGATCTGCTTGGACC
ATGGGGCCTACCTGTCGTTTTCAGGGACCATCACCTTCAACTCAGCCGGTCCGCAACGCGACGCACTGGCGATCGCGCCA
GACAATCGCATCCTCGTAGAGACTGACGCGCCCTTCCTAACTCCCGCCCCGCGCCGGGGCAAGCGCAACGGGCCATACTT
GTTGCCTCACACTGCACGCTTCATCGCGAAACAGCGGGGGTGGGATGAACTCCGTGTCTGTCAACAACTAACCGAGAACG
CCTTTGCCGCGTATGGAGGTGCCTGGTGA

Upstream 100 bases:

>100_bases
GCTCTAAAGCTGTCGCCCAGGTGGCCCGCGCCACCGGAGTCGACCGCCACGATCTCTACGACGCCGCGCAGAACGCCTTG
ACCACTGACAAGGAGGAATC

Downstream 100 bases:

>100_bases
GTGAAACCGGCCTGCTCAACCCGGCGTCGATCCGGCGCATTGCTGACCAGATCGGTCTGCGACCGACAAAGACTCGCGGG
CAAAATTTCGTCCACGACGC

Product: DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNEAIREVLGEAGAPPLPEPLAGSIVDSHTHLDTVQDVVGIEPAISLAAAREVGVTRIAQIGCDVAGSEFAEELARTHKN
VIAAVAIHPNDAARLGREKIGDALKRIDELASVGNHVRAIGETGIDHFGTTDADGQALQREVFAAHIAMAHAHDLTLAIH
MRDARNGGEGDEPPSGRQAHDDVVDVLNSEGWPDRIIMHCYSGDADLARICLDHGAYLSFSGTITFNSAGPQRDALAIAP
DNRILVETDAPFLTPAPRRGKRNGPYLLPHTARFIAKQRGWDELRVCQQLTENAFAAYGGAW

Sequences:

>Translated_302_residues
MNEAIREVLGEAGAPPLPEPLAGSIVDSHTHLDTVQDVVGIEPAISLAAAREVGVTRIAQIGCDVAGSEFAEELARTHKN
VIAAVAIHPNDAARLGREKIGDALKRIDELASVGNHVRAIGETGIDHFGTTDADGQALQREVFAAHIAMAHAHDLTLAIH
MRDARNGGEGDEPPSGRQAHDDVVDVLNSEGWPDRIIMHCYSGDADLARICLDHGAYLSFSGTITFNSAGPQRDALAIAP
DNRILVETDAPFLTPAPRRGKRNGPYLLPHTARFIAKQRGWDELRVCQQLTENAFAAYGGAW
>Mature_302_residues
MNEAIREVLGEAGAPPLPEPLAGSIVDSHTHLDTVQDVVGIEPAISLAAAREVGVTRIAQIGCDVAGSEFAEELARTHKN
VIAAVAIHPNDAARLGREKIGDALKRIDELASVGNHVRAIGETGIDHFGTTDADGQALQREVFAAHIAMAHAHDLTLAIH
MRDARNGGEGDEPPSGRQAHDDVVDVLNSEGWPDRIIMHCYSGDADLARICLDHGAYLSFSGTITFNSAGPQRDALAIAP
DNRILVETDAPFLTPAPRRGKRNGPYLLPHTARFIAKQRGWDELRVCQQLTENAFAAYGGAW

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI1787342, Length=279, Percent_Identity=30.8243727598566, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI48994985, Length=268, Percent_Identity=27.9850746268657, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082439, Length=278, Percent_Identity=24.8201438848921, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=26.056338028169, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 32338; Mature: 32338

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEAIREVLGEAGAPPLPEPLAGSIVDSHTHLDTVQDVVGIEPAISLAAAREVGVTRIAQ
CCHHHHHHHHHCCCCCCCCCHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IGCDVAGSEFAEELARTHKNVIAAVAIHPNDAARLGREKIGDALKRIDELASVGNHVRAI
HCCCCCHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GETGIDHFGTTDADGQALQREVFAAHIAMAHAHDLTLAIHMRDARNGGEGDEPPSGRQAH
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCHH
DDVVDVLNSEGWPDRIIMHCYSGDADLARICLDHGAYLSFSGTITFNSAGPQRDALAIAP
HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEECC
DNRILVETDAPFLTPAPRRGKRNGPYLLPHTARFIAKQRGWDELRVCQQLTENAFAAYGG
CCEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
AW
CC
>Mature Secondary Structure
MNEAIREVLGEAGAPPLPEPLAGSIVDSHTHLDTVQDVVGIEPAISLAAAREVGVTRIAQ
CCHHHHHHHHHCCCCCCCCCHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IGCDVAGSEFAEELARTHKNVIAAVAIHPNDAARLGREKIGDALKRIDELASVGNHVRAI
HCCCCCHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GETGIDHFGTTDADGQALQREVFAAHIAMAHAHDLTLAIHMRDARNGGEGDEPPSGRQAH
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCHH
DDVVDVLNSEGWPDRIIMHCYSGDADLARICLDHGAYLSFSGTITFNSAGPQRDALAIAP
HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEEEEEECCCCCCCCEEEECC
DNRILVETDAPFLTPAPRRGKRNGPYLLPHTARFIAKQRGWDELRVCQQLTENAFAAYGG
CCEEEEECCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
AW
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]