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The map label for this gene is fucR [H]

Identifier: 50841551

GI number: 50841551

Start: 59565

End: 60251

Strand: Direct

Name: fucR [H]

Synonym: PPA0060

Alternate gene names: 50841551

Gene position: 59565-60251 (Clockwise)

Preceding gene: 50841550

Following gene: 50841552

Centisome position: 2.33

GC content: 61.14

Gene sequence:

>687_bases
ATGCGAACCGTCGACGTCGCTCGGAATCTGAACGTGAGTATGGCCACGGCCCGACGCGATTGCATCGCCCTGGAAAATAA
GGGCATCATCGAGCGTTCCTGGGGAGGTATCCAACTCGTTACGAGCGTGGACGACCACTTCGTCATGAACCATCACACTC
AGGCCAAAGCTGCGATCGCCCGCAAGGCCACCGAGCTTATCCACGACGGCGACACGATCATCATGGACATCGGCACCACC
GTCCACCACCTGTCCGGGCTGCTCACCGGGCGCTCCATCACCGTGCTTACTGCATCCCTGCCCGTCTTTGAGACTCTCAG
AACCGCCCCGGACGTCACCGTTGTCGTGCTCGGGGGAGTGTGGTCGGAGCGGTACCAGTGCTTTGACGGTCAGTTCGTCG
CTGACGCGCTGACCCGCCACCAAGCTGATCTGGCCTTCCTAGGCTGCTCAGGGGTGAGTGCTAACGGGCGAGTTCGAGAT
ACGAGTCGTTCCCAGGCTTACATCAAGCAGGCGATCATCGCTGCCGCGAGTCGGAGCTACTTGCTCGTCGACTCCGAGAA
ATTCCCGGGCGTCGGAGCGCATTCCCCGTTCACCCTCGAGGAGGTCAGTGGCGTCATTACCACCGGGCCGCTGCCACCGG
ACTTCGACGCACACTGCGAATCAACAGTGGAGGTCATTACCGCATGA

Upstream 100 bases:

>100_bases
AAATTGTGTAGACGGATGGTCATGGATCGGTACCATGGGGCACATGCTCAAGGCCGCTCGTCACGACGCGATCGTCGAAC
TGCTCCGGGACCGGCCTGCC

Downstream 100 bases:

>100_bases
AGCTCACCATCCTCGGTGGCGGAGGATTCCGCGTTCCGCTGGTATTTAAGGCCCTTGCTCACGACACCTCGCCGCAACGA
GTCACCGAACTGCGGCTCTA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MRTVDVARNLNVSMATARRDCIALENKGIIERSWGGIQLVTSVDDHFVMNHHTQAKAAIARKATELIHDGDTIIMDIGTT
VHHLSGLLTGRSITVLTASLPVFETLRTAPDVTVVVLGGVWSERYQCFDGQFVADALTRHQADLAFLGCSGVSANGRVRD
TSRSQAYIKQAIIAAASRSYLLVDSEKFPGVGAHSPFTLEEVSGVITTGPLPPDFDAHCESTVEVITA

Sequences:

>Translated_228_residues
MRTVDVARNLNVSMATARRDCIALENKGIIERSWGGIQLVTSVDDHFVMNHHTQAKAAIARKATELIHDGDTIIMDIGTT
VHHLSGLLTGRSITVLTASLPVFETLRTAPDVTVVVLGGVWSERYQCFDGQFVADALTRHQADLAFLGCSGVSANGRVRD
TSRSQAYIKQAIIAAASRSYLLVDSEKFPGVGAHSPFTLEEVSGVITTGPLPPDFDAHCESTVEVITA
>Mature_228_residues
MRTVDVARNLNVSMATARRDCIALENKGIIERSWGGIQLVTSVDDHFVMNHHTQAKAAIARKATELIHDGDTIIMDIGTT
VHHLSGLLTGRSITVLTASLPVFETLRTAPDVTVVVLGGVWSERYQCFDGQFVADALTRHQADLAFLGCSGVSANGRVRD
TSRSQAYIKQAIIAAASRSYLLVDSEKFPGVGAHSPFTLEEVSGVITTGPLPPDFDAHCESTVEVITA

Specific function: Transcriptional activator of the fuc operon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=234, Percent_Identity=32.0512820512821, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789170, Length=213, Percent_Identity=27.6995305164319, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789829, Length=214, Percent_Identity=29.4392523364486, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1788069, Length=217, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1789519, Length=225, Percent_Identity=27.1111111111111, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082344, Length=217, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI226510968, Length=210, Percent_Identity=30.952380952381, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790753, Length=205, Percent_Identity=26.3414634146341, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787540, Length=220, Percent_Identity=25.9090909090909, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790635, Length=191, Percent_Identity=24.6073298429319, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 24515; Mature: 24515

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVDVARNLNVSMATARRDCIALENKGIIERSWGGIQLVTSVDDHFVMNHHTQAKAAIA
CCCCCCCCCCCEEEHHHCCCEEEECCCCCEEECCCCEEEEEECCCCEEECCCCHHHHHHH
RKATELIHDGDTIIMDIGTTVHHLSGLLTGRSITVLTASLPVFETLRTAPDVTVVVLGGV
HHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCEEEEEECCC
WSERYQCFDGQFVADALTRHQADLAFLGCSGVSANGRVRDTSRSQAYIKQAIIAAASRSY
CHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHCCCCE
LLVDSEKFPGVGAHSPFTLEEVSGVITTGPLPPDFDAHCESTVEVITA
EEEECCCCCCCCCCCCEEHHHHCCEEEECCCCCCCCCHHCCCEEEECC
>Mature Secondary Structure
MRTVDVARNLNVSMATARRDCIALENKGIIERSWGGIQLVTSVDDHFVMNHHTQAKAAIA
CCCCCCCCCCCEEEHHHCCCEEEECCCCCEEECCCCEEEEEECCCCEEECCCCHHHHHHH
RKATELIHDGDTIIMDIGTTVHHLSGLLTGRSITVLTASLPVFETLRTAPDVTVVVLGGV
HHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCEEEEEECCC
WSERYQCFDGQFVADALTRHQADLAFLGCSGVSANGRVRDTSRSQAYIKQAIIAAASRSY
CHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHCCCCE
LLVDSEKFPGVGAHSPFTLEEVSGVITTGPLPPDFDAHCESTVEVITA
EEEECCCCCCCCCCCCEEHHHHCCEEEECCCCCCCCCHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]