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The map label for this gene is rbsR [H]

Identifier: 50841508

GI number: 50841508

Start: 16732

End: 17739

Strand: Direct

Name: rbsR [H]

Synonym: PPA0014

Alternate gene names: 50841508

Gene position: 16732-17739 (Clockwise)

Preceding gene: 50841507

Following gene: 50841509

Centisome position: 0.65

GC content: 59.23

Gene sequence:

>1008_bases
ATGACTCACAAACCGACGATCAAGGATGTCGCTCGGTTGGCAGGAGTGTCGCTGGGGACGGCATCGCGAGTTCTTAACGG
CAGCTCCGCGACCTCCGAGGCGTCCCGCAGCGCGGTGCACAACGCAGCCCATGAGTTGGGATATCTGTCGAATGCTCACG
CTAGGTCCTTGCGTTCATCCCACAGTGGCGTCATCGGGTTGGTCGTCCCAGATATCCGTAACCCGTATTTTGCTGAGTTG
GCGTCGGTCGTTGAAAATGCGTGCCTCGCTTATGGTTGGGCAACTTTGCTGTGCAATGCCGACGAGTCTCCCGACCAGTT
CAACCGGTACGTCAACACTCTGCGTCGTCAGAGAGTTGACGGGGCGATCGTGACGCCCACTGGCAGCGGCGGGCAGGCCG
TCAAAGACTTAGTTGACGACGGCGTTCAGGTGGTGTGCGTGGACCGTGAAATCACGGGGTCGCCTCTGCCAGCCGTCACC
TCTGATCCCTGGAATGGAATGAGACAGGCCGTCCACCACCTGGTGGATCACGGGCATCGCAGGATCGGTTTCATTACCGG
ACCACAACAAACTTCAACCGGTCTGGAGCGTTATCAGGCCTATCGTCAACTGTTGGCTGAACATGGACTGGAGGTTGACG
AGGACCTCGTTGTCGAAGGCGACTTTCAGGAGGAGTCAGGACGCATGGGTGCCCGACGACTACTTGACGGTGGTGCAACT
GCCATTTTTGCGTCCGACTCCCTCATGTCGATGGGGGCGCTGCGGACATGCATTGACCAGGGGGTTCGCATCGGTGACGA
GATCGACCTGGTCGGTTTCGACGACCTGCCGGTATTCAGCCTCACCAATCCCGCCCTCACCGTCGTCGCCCAGGATATTG
ACGCCATGGGGAAGGTCGCCGTCGATCTACTTAACCGTGCCATGTCTGGGGAGCCCACCAGCTCCGCCCGCTTGGACACC
CACCTCATCGTCAGGGCATCAACTCGAATGGTCAAGGAGAACCAGTGA

Upstream 100 bases:

>100_bases
TGTGGTTCCGTGTAAATCACACACTCATGGAAACGTTTCCATAAGGTGGACATGGGAAAACTCTTCGACACCTCACACTC
GACGACGAGAGGAGGGAAAG

Downstream 100 bases:

>100_bases
CAACAGTACTTCGACTCGACCACGTCACTAAGGCTTTCGGACCCGTCAAGGTCATCCAAGACGTATCGGTGGACGTCATT
CCTGGCAGGGTGCGCGTCCT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MTHKPTIKDVARLAGVSLGTASRVLNGSSATSEASRSAVHNAAHELGYLSNAHARSLRSSHSGVIGLVVPDIRNPYFAEL
ASVVENACLAYGWATLLCNADESPDQFNRYVNTLRRQRVDGAIVTPTGSGGQAVKDLVDDGVQVVCVDREITGSPLPAVT
SDPWNGMRQAVHHLVDHGHRRIGFITGPQQTSTGLERYQAYRQLLAEHGLEVDEDLVVEGDFQEESGRMGARRLLDGGAT
AIFASDSLMSMGALRTCIDQGVRIGDEIDLVGFDDLPVFSLTNPALTVVAQDIDAMGKVAVDLLNRAMSGEPTSSARLDT
HLIVRASTRMVKENQ

Sequences:

>Translated_335_residues
MTHKPTIKDVARLAGVSLGTASRVLNGSSATSEASRSAVHNAAHELGYLSNAHARSLRSSHSGVIGLVVPDIRNPYFAEL
ASVVENACLAYGWATLLCNADESPDQFNRYVNTLRRQRVDGAIVTPTGSGGQAVKDLVDDGVQVVCVDREITGSPLPAVT
SDPWNGMRQAVHHLVDHGHRRIGFITGPQQTSTGLERYQAYRQLLAEHGLEVDEDLVVEGDFQEESGRMGARRLLDGGAT
AIFASDSLMSMGALRTCIDQGVRIGDEIDLVGFDDLPVFSLTNPALTVVAQDIDAMGKVAVDLLNRAMSGEPTSSARLDT
HLIVRASTRMVKENQ
>Mature_334_residues
THKPTIKDVARLAGVSLGTASRVLNGSSATSEASRSAVHNAAHELGYLSNAHARSLRSSHSGVIGLVVPDIRNPYFAELA
SVVENACLAYGWATLLCNADESPDQFNRYVNTLRRQRVDGAIVTPTGSGGQAVKDLVDDGVQVVCVDREITGSPLPAVTS
DPWNGMRQAVHHLVDHGHRRIGFITGPQQTSTGLERYQAYRQLLAEHGLEVDEDLVVEGDFQEESGRMGARRLLDGGATA
IFASDSLMSMGALRTCIDQGVRIGDEIDLVGFDDLPVFSLTNPALTVVAQDIDAMGKVAVDLLNRAMSGEPTSSARLDTH
LIVRASTRMVKENQ

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=328, Percent_Identity=31.0975609756098, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1787948, Length=328, Percent_Identity=32.9268292682927, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1790194, Length=317, Percent_Identity=31.2302839116719, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789202, Length=294, Percent_Identity=34.3537414965986, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1788474, Length=326, Percent_Identity=30.9815950920245, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789068, Length=296, Percent_Identity=30.4054054054054, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1787580, Length=332, Percent_Identity=26.2048192771084, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1786540, Length=337, Percent_Identity=27.0029673590504, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787906, Length=302, Percent_Identity=28.476821192053, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI48994940, Length=326, Percent_Identity=26.6871165644172, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790689, Length=298, Percent_Identity=24.1610738255034, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789456, Length=316, Percent_Identity=26.5822784810127, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790715, Length=309, Percent_Identity=22.3300970873786, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786268, Length=291, Percent_Identity=21.6494845360825, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35925; Mature: 35794

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHKPTIKDVARLAGVSLGTASRVLNGSSATSEASRSAVHNAAHELGYLSNAHARSLRSS
CCCCCCHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
HSGVIGLVVPDIRNPYFAELASVVENACLAYGWATLLCNADESPDQFNRYVNTLRRQRVD
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCC
GAIVTPTGSGGQAVKDLVDDGVQVVCVDREITGSPLPAVTSDPWNGMRQAVHHLVDHGHR
CEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
RIGFITGPQQTSTGLERYQAYRQLLAEHGLEVDEDLVVEGDFQEESGRMGARRLLDGGAT
EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHCCCCE
AIFASDSLMSMGALRTCIDQGVRIGDEIDLVGFDDLPVFSLTNPALTVVAQDIDAMGKVA
EEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHH
VDLLNRAMSGEPTSSARLDTHLIVRASTRMVKENQ
HHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCC
>Mature Secondary Structure 
THKPTIKDVARLAGVSLGTASRVLNGSSATSEASRSAVHNAAHELGYLSNAHARSLRSS
CCCCCHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
HSGVIGLVVPDIRNPYFAELASVVENACLAYGWATLLCNADESPDQFNRYVNTLRRQRVD
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCC
GAIVTPTGSGGQAVKDLVDDGVQVVCVDREITGSPLPAVTSDPWNGMRQAVHHLVDHGHR
CEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
RIGFITGPQQTSTGLERYQAYRQLLAEHGLEVDEDLVVEGDFQEESGRMGARRLLDGGAT
EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHCCCCE
AIFASDSLMSMGALRTCIDQGVRIGDEIDLVGFDDLPVFSLTNPALTVVAQDIDAMGKVA
EEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHH
VDLLNRAMSGEPTSSARLDTHLIVRASTRMVKENQ
HHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]