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The map label for this gene is rpiR [C]

Identifier: 50365456

GI number: 50365456

Start: 746278

End: 747093

Strand: Direct

Name: rpiR [C]

Synonym: Mfl641

Alternate gene names: 50365456

Gene position: 746278-747093 (Clockwise)

Preceding gene: 50365430

Following gene: 50365462

Centisome position: 94.08

GC content: 24.63

Gene sequence:

>816_bases
ATGAGTAAAAATCTTACTTTTGCTGAAATGTCAGCACTTGATCAAATAAATAAAAACATTAACTTCTTTGTTTCTAATAA
TTTACAAAATTTATCTAAAAATTATAACGTTGGTGAAGCTACTCTAGTTAGATTAGTTAAGAAAAGAGGTTTTTCTTCTC
TTAAAGAAATGCAAATAAGTTATGCAAAGAAAATTGATATTGAGAATTTATTTGGTAATAGTGATAATAATCAAAATACT
AAAATTATAAATGATGTAGCAAATTTTGAAGTTTTTTCAATTATACAAACAAGCGAATGTATAAATATTAAAGATATCAA
TAAAACTGCAGAGCTACTTATAAATTCAAATAAAAGACTTTTTTTCGGAATTGAGAATAGTCAATTATCTGCAACATTTC
TTGCAAACAATTTGCAAAAAATAGGTTTAAATTGTTCAGTTTATCAATCTGTTCACGGAGCAATCACAGAACTTAACTTT
TTAAATAAGGAAGATTCTATAATATTAATCTTTAGTTCTAGTGGTGAAACTAAAGAGTGCATTGAAGTAGCTAAAATAGC
ACATGAAATGAATTTAAGGTACATCTGAATTGGATCAGAGTTCGCTTCAAAAAAATCAGAATATTTACAAATGGCAAATA
TTAAAATTTTTCACTCATATCATAAAAATGAAATATTAAGATTTCCTAATATTTCATCTTCTAGTGGCCAACTTTTTATT
TCAAACTTACTTTTTAATATTGTTATAAATAATAAAGATGGAACTTCAGATATTTTAACTAAGTCTAATACAATGGTTAA
GGGTTGAAACTCTTAA

Upstream 100 bases:

>100_bases
TTAAATACATAAATGCTTACGGCTACTTTTTTATTATTCATTTTTTTCTCCTTTTTATTTTATATAATTAATTAAGATAT
TCTAAATTGAGGTGTTTTAT

Downstream 100 bases:

>100_bases
CCATTTTTTTTAATAAATTCATGAACTTCTTTAAGTTCAGGTAATGAAGATTGCGCTCCCATTTTTGTTACTGCTAATGA
AGCTGCTGCAGTGGCAAATT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSKNLTFAEMSALDQINKNINFFVSNNLQNLSKNYNVGEATLVRLVKKRGFSSLKEMQISYAKKIDIENLFGNSDNNQNT
KIINDVANFEVFSIIQTSECINIKDINKTAELLINSNKRLFFGIENSQLSATFLANNLQKIGLNCSVYQSVHGAITELNF
LNKEDSIILIFSSSGETKECIEVAKIAHEMNLRYIWIGSEFASKKSEYLQMANIKIFHSYHKNEILRFPNISSSSGQLFI
SNLLFNIVINNKDGTSDILTKSNTMVKGWNS

Sequences:

>Translated_271_residues
MSKNLTFAEMSALDQINKNINFFVSNNLQNLSKNYNVGEATLVRLVKKRGFSSLKEMQISYAKKIDIENLFGNSDNNQNT
KIINDVANFEVFSIIQTSECINIKDINKTAELLINSNKRLFFGIENSQLSATFLANNLQKIGLNCSVYQSVHGAITELNF
LNKEDSIILIFSSSGETKECIEVAKIAHEMNLRYI*IGSEFASKKSEYLQMANIKIFHSYHKNEILRFPNISSSSGQLFI
SNLLFNIVINNKDGTSDILTKSNTMVKG*NS
>Mature_270_residues
SKNLTFAEMSALDQINKNINFFVSNNLQNLSKNYNVGEATLVRLVKKRGFSSLKEMQISYAKKIDIENLFGNSDNNQNTK
IINDVANFEVFSIIQTSECINIKDINKTAELLINSNKRLFFGIENSQLSATFLANNLQKIGLNCSVYQSVHGAITELNFL
NKEDSIILIFSSSGETKECIEVAKIAHEMNLRYI*IGSEFASKKSEYLQMANIKIFHSYHKNEILRFPNISSSSGQLFIS
NLLFNIVINNKDGTSDILTKSNTMVKG*NS

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30230; Mature: 30099

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNLTFAEMSALDQINKNINFFVSNNLQNLSKNYNVGEATLVRLVKKRGFSSLKEMQIS
CCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHH
YAKKIDIENLFGNSDNNQNTKIINDVANFEVFSIIQTSECINIKDINKTAELLINSNKRL
HHHHCCHHHHCCCCCCCCCCEEEHHHHCCEEEEEEECCCCCCEEECCHHHHEEECCCCEE
FFGIENSQLSATFLANNLQKIGLNCSVYQSVHGAITELNFLNKEDSIILIFSSSGETKEC
EEEECCCCEEHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
IEVAKIAHEMNLRYIIGSEFASKKSEYLQMANIKIFHSYHKNEILRFPNISSSSGQLFIS
HHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCEEEEEECCCCCEEECCCCCCCCCCEEEE
NLLFNIVINNKDGTSDILTKSNTMVKGNS
EEEEEEEECCCCCCHHHHCCCCEEEECCC
>Mature Secondary Structure 
SKNLTFAEMSALDQINKNINFFVSNNLQNLSKNYNVGEATLVRLVKKRGFSSLKEMQIS
CCCCCHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHH
YAKKIDIENLFGNSDNNQNTKIINDVANFEVFSIIQTSECINIKDINKTAELLINSNKRL
HHHHCCHHHHCCCCCCCCCCEEEHHHHCCEEEEEEECCCCCCEEECCHHHHEEECCCCEE
FFGIENSQLSATFLANNLQKIGLNCSVYQSVHGAITELNFLNKEDSIILIFSSSGETKEC
EEEECCCCEEHHHHHCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
IEVAKIAHEMNLRYIIGSEFASKKSEYLQMANIKIFHSYHKNEILRFPNISSSSGQLFIS
HHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCEEEEEECCCCCEEECCCCCCCCCCEEEE
NLLFNIVINNKDGTSDILTKSNTMVKGNS
EEEEEEEECCCCCCHHHHCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]