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The map label for this gene is deoC1 [H]

Identifier: 50364936

GI number: 50364936

Start: 146034

End: 146696

Strand: Direct

Name: deoC1 [H]

Synonym: Mfl121

Alternate gene names: 50364936

Gene position: 146034-146696 (Clockwise)

Preceding gene: 50364935

Following gene: 50364937

Centisome position: 18.41

GC content: 31.22

Gene sequence:

>663_bases
ATGAAACTAAACAAATATATAGATCACACATTATTAAAACAAGATGCTACGAAAGCTGAAATTAAACAATTATGTGATGA
AGCAATTGAATTTGATTTTGCAACAGTTTGTGTTAATTCATATTGAACAAGCTATTGTAAAGAATTATTAAAAGGCACAA
ATGTAGGAATAACAAATGTTGTAGGTTTTCCTCTAGGTGCATGCACAACAGCTACAAAAGCATTCGAAGTTTCTGAAGCA
ATTAAAGATGGTGCAACAGAAATTGATATGGTATTAAATATTGGTGCATTAAAAGACAAAAATTATGAATTAGTTTTAGA
AGACATGAAAGCTGTAAAAAAAGCAGCTGGATCACATGTTGTTAAATGTATTATGGAAAATTGTTTATTAACAAAAGAAG
AAATCATGAAAGCTTGTGAAATAGCTGTTGAAGCTGGATTAGAATTTGTTAAAACATCAACAGGATTTTCAAAATCAGGT
GCAACATTTGAAGATGTTAAACTAATGAAGTCAGTTGTTAAAGACAATGCTTTAGTTAAAGCAGCTGGTGGAGTTAGAAC
ATTTGAAGATGCTCAAAAAATGATTGAAGCAGGAGCTGACCGCTTAGGAACAAGTGGTGGAGTAGCTATTATTAAAGGTG
AAGAAAACAACGCGAGTTACTAA

Upstream 100 bases:

>100_bases
TTTATTTTATAGGTGTTGGTGAATCTGTTCAAAACGCTAAAGTTAAAGTAGACGAAATTATTAAAGAATTAAAATTAAAA
ATGAATATATAGGAGAAAAA

Downstream 100 bases:

>100_bases
AACTAGCGTTTTTTTATTTTGCTCATTTTTATTAAAAGTTTGCAAAAAGGAACATAAAAATTCTAATTATTGATACTAAA
GTTATTAAAAAGAAGATTTT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase 1; DERA 1; Deoxyriboaldolase 1 [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKLNKYIDHTLLKQDATKAEIKQLCDEAIEFDFATVCVNSYWTSYCKELLKGTNVGITNVVGFPLGACTTATKAFEVSEA
IKDGATEIDMVLNIGALKDKNYELVLEDMKAVKKAAGSHVVKCIMENCLLTKEEIMKACEIAVEAGLEFVKTSTGFSKSG
ATFEDVKLMKSVVKDNALVKAAGGVRTFEDAQKMIEAGADRLGTSGGVAIIKGEENNASY

Sequences:

>Translated_220_residues
MKLNKYIDHTLLKQDATKAEIKQLCDEAIEFDFATVCVNSY*TSYCKELLKGTNVGITNVVGFPLGACTTATKAFEVSEA
IKDGATEIDMVLNIGALKDKNYELVLEDMKAVKKAAGSHVVKCIMENCLLTKEEIMKACEIAVEAGLEFVKTSTGFSKSG
ATFEDVKLMKSVVKDNALVKAAGGVRTFEDAQKMIEAGADRLGTSGGVAIIKGEENNASY
>Mature_220_residues
MKLNKYIDHTLLKQDATKAEIKQLCDEAIEFDFATVCVNSY*TSYCKELLKGTNVGITNVVGFPLGACTTATKAFEVSEA
IKDGATEIDMVLNIGALKDKNYELVLEDMKAVKKAAGSHVVKCIMENCLLTKEEIMKACEIAVEAGLEFVKTSTGFSKSG
ATFEDVKLMKSVVKDNALVKAAGGVRTFEDAQKMIEAGADRLGTSGGVAIIKGEENNASY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=232, Percent_Identity=31.0344827586207, Blast_Score=84, Evalue=9e-17,
Organism=Escherichia coli, GI1790841, Length=217, Percent_Identity=34.5622119815668, Blast_Score=76, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17533015, Length=220, Percent_Identity=31.8181818181818, Blast_Score=81, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23524; Mature: 23524

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNKYIDHTLLKQDATKAEIKQLCDEAIEFDFATVCVNSYTSYCKELLKGTNVGITNVV
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GFPLGACTTATKAFEVSEAIKDGATEIDMVLNIGALKDKNYELVLEDMKAVKKAAGSHVV
HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KCIMENCLLTKEEIMKACEIAVEAGLEFVKTSTGFSKSGATFEDVKLMKSVVKDNALVKA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEC
AGGVRTFEDAQKMIEAGADRLGTSGGVAIIKGEENNASY
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MKLNKYIDHTLLKQDATKAEIKQLCDEAIEFDFATVCVNSYTSYCKELLKGTNVGITNVV
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GFPLGACTTATKAFEVSEAIKDGATEIDMVLNIGALKDKNYELVLEDMKAVKKAAGSHVV
HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KCIMENCLLTKEEIMKACEIAVEAGLEFVKTSTGFSKSGATFEDVKLMKSVVKDNALVKA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEC
AGGVRTFEDAQKMIEAGADRLGTSGGVAIIKGEENNASY
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA