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The map label for this gene is rarA [H]

Identifier: 50086546

GI number: 50086546

Start: 3513635

End: 3514906

Strand: Reverse

Name: rarA [H]

Synonym: ACIAD3596

Alternate gene names: 50086546

Gene position: 3514906-3513635 (Counterclockwise)

Preceding gene: 50086547

Following gene: 50086545

Centisome position: 97.67

GC content: 44.1

Gene sequence:

>1272_bases
ATGTCAGATACTCATATTCCACTTCCCGAACGTTTACGTCCACGAGATTTATCGGAAATTATTGGACAAGATCATTTGCT
TGGAGAGCATGCGCCATTACGTCAAATGATCGATCAGGGGCATTTACCCTCAATTATTTTTTGGGGGCCACCTGGGGTTG
GAAAAACGACCATTGCGCTTTTATTGGCACAAGCGGTAGATCGTCCTTTTGTCAGCTTATCTGCACTAAATACCGGGGTA
AAAGAACTACGGGAAATCATTGCAGAAAGTGGTGATTTACTGACGCCTGTGGTATTCATTGACGAGATTCATCGTTTTAA
CAAATCTCAGCAAGATGCACTTTTGAATGCGGTTGAGAAGGGAAAAATCACCCTGATTGGTGCGACGACTGAAAATCCAT
CTTTTGAAGTGAATAGTGCCTTATTGTCACGTTGTCAGGTCTACACCTTAAATGTATTGGATTCGGCTGCGATTCAAAAT
TTAATTGATAGAGCTATCGACTCAGATTCATTTTTAAAACAGCGTCATATTCATATCGAGGAATATGAGGCACTGATCCA
GTTTGCAGCGGGGGATGCGCGTAAGGCCCTGAATCTGATTGACCTGATTGCCAGTACCTTTGAGCCAGATCAAGAAAACA
TCGTCACCAATGCGGTAACAGTCAAGGTGGCACAACAAAATATTGCCCGCTATGACAAATCTGGCGAGCAGCATTACGAT
ATTATTTCGGCATTCATTAAATCGATACGTGGTAGTGATCCTGATGCCGCCTTGTACTGGATGGCACGTATGATCAAAGG
TGGAGAAGATCCTGTATTTATTGCAAGGCGTATGCTGATTGCAGCATCTGAAGATATTGGTAATTCGAATCCGAATGCGC
TGTTGTTGGCTGGTGAATGTTTTCGCTCGGTTCAGGCGGTGGGTATGCCTGAAGCGAGAATTATTCTGGGGCAGTGTGCG
GTTTATCTGGCCACCAGCCCCAAAAGTAACAGTACTTATTTAGCGATTGATCGCGCATTGGCGTTGGCTGAGAAAACAGC
CAATTTGCCAGTGCCGTTGCATTTACGCAATGCACCCACCAAGTTGATGAAACAGCAAGGTTATGGCGCAGATTATCTAT
ATCCCCATCATTATCCTGAGCATTTTGTACTTCAAGAGTATCTGCCACCAGAGCTTAAAGGCACCAAGCTGTATGAATTT
TCACGTAATAAACGTGAAGTTGAAGGGGAGCGATTACAACAAAGACGCTGGCAACAAGATCAGCAGCAATAA

Upstream 100 bases:

>100_bases
AATGCAGATATTCAGAAATGATTTATTTGATTGTAGATTCAAATTGTAGATTTGCATCAGACACAATAGACTACAGGAAA
ACACCATTAAGTCATTCGTA

Downstream 100 bases:

>100_bases
ATTAAACTGCTGAATGCGGATATGAAAATAGAAAAAAAGCCCAACATCCTGTTGGGCTATTTTCGTATTCCGTTGCTAGG
TATAACTCCTGTCGTACCTC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAVDRPFVSLSALNTGV
KELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNVLDSAAIQN
LIDRAIDSDSFLKQRHIHIEEYEALIQFAAGDARKALNLIDLIASTFEPDQENIVTNAVTVKVAQQNIARYDKSGEQHYD
IISAFIKSIRGSDPDAALYWMARMIKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQCA
VYLATSPKSNSTYLAIDRALALAEKTANLPVPLHLRNAPTKLMKQQGYGADYLYPHHYPEHFVLQEYLPPELKGTKLYEF
SRNKREVEGERLQQRRWQQDQQQ

Sequences:

>Translated_423_residues
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAVDRPFVSLSALNTGV
KELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNVLDSAAIQN
LIDRAIDSDSFLKQRHIHIEEYEALIQFAAGDARKALNLIDLIASTFEPDQENIVTNAVTVKVAQQNIARYDKSGEQHYD
IISAFIKSIRGSDPDAALYWMARMIKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQCA
VYLATSPKSNSTYLAIDRALALAEKTANLPVPLHLRNAPTKLMKQQGYGADYLYPHHYPEHFVLQEYLPPELKGTKLYEF
SRNKREVEGERLQQRRWQQDQQQ
>Mature_422_residues
SDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAVDRPFVSLSALNTGVK
ELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNVLDSAAIQNL
IDRAIDSDSFLKQRHIHIEEYEALIQFAAGDARKALNLIDLIASTFEPDQENIVTNAVTVKVAQQNIARYDKSGEQHYDI
ISAFIKSIRGSDPDAALYWMARMIKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQCAV
YLATSPKSNSTYLAIDRALALAEKTANLPVPLHLRNAPTKLMKQQGYGADYLYPHHYPEHFVLQEYLPPELKGTKLYEFS
RNKREVEGERLQQRRWQQDQQQ

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=41.4965986394558, Blast_Score=314, Evalue=8e-86,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=37.4149659863946, Blast_Score=266, Evalue=4e-71,
Organism=Homo sapiens, GI31563534, Length=216, Percent_Identity=30.0925925925926, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI1787119, Length=431, Percent_Identity=43.8515081206497, Blast_Score=350, Evalue=1e-97,
Organism=Caenorhabditis elegans, GI71986063, Length=238, Percent_Identity=23.9495798319328, Blast_Score=68, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=42.5882352941177, Blast_Score=305, Evalue=1e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=276, Percent_Identity=24.2753623188406, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6322528, Length=290, Percent_Identity=22.0689655172414, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19921076, Length=238, Percent_Identity=26.0504201680672, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647857, Length=281, Percent_Identity=25.2669039145907, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47248; Mature: 47116

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIAL
CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHH
LLAQAVDRPFVSLSALNTGVKELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
GKITLIGATTENPSFEVNSALLSRCQVYTLNVLDSAAIQNLIDRAIDSDSFLKQRHIHIE
CCEEEEEECCCCCCCCHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
EYEALIQFAAGDARKALNLIDLIASTFEPDQENIVTNAVTVKVAQQNIARYDKSGEQHYD
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHEEHHHHHHHHHHCCCCCHHHH
IISAFIKSIRGSDPDAALYWMARMIKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGEC
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
FRSVQAVGMPEARIILGQCAVYLATSPKSNSTYLAIDRALALAEKTANLPVPLHLRNAPT
HHHHHHCCCCHHHHHHHHHEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCCEEEECCCHH
KLMKQQGYGADYLYPHHYPEHFVLQEYLPPELKGTKLYEFSRNKREVEGERLQQRRWQQD
HHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHH
QQQ
CCC
>Mature Secondary Structure 
SDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIAL
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHH
LLAQAVDRPFVSLSALNTGVKELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
GKITLIGATTENPSFEVNSALLSRCQVYTLNVLDSAAIQNLIDRAIDSDSFLKQRHIHIE
CCEEEEEECCCCCCCCHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
EYEALIQFAAGDARKALNLIDLIASTFEPDQENIVTNAVTVKVAQQNIARYDKSGEQHYD
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHEEHHHHHHHHHHCCCCCHHHH
IISAFIKSIRGSDPDAALYWMARMIKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGEC
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
FRSVQAVGMPEARIILGQCAVYLATSPKSNSTYLAIDRALALAEKTANLPVPLHLRNAPT
HHHHHHCCCCHHHHHHHHHEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCCEEEECCCHH
KLMKQQGYGADYLYPHHYPEHFVLQEYLPPELKGTKLYEFSRNKREVEGERLQQRRWQQD
HHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHH
QQQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]