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The map label for this gene is yggB [C]

Identifier: 50086438

GI number: 50086438

Start: 3403247

End: 3404230

Strand: Direct

Name: yggB [C]

Synonym: ACIAD3477

Alternate gene names: 50086438

Gene position: 3403247-3404230 (Clockwise)

Preceding gene: 50086437

Following gene: 50086441

Centisome position: 94.57

GC content: 42.38

Gene sequence:

>984_bases
GTGTCTGAACAAAATAAACTAGATCAGGTCGCATCAGATACAGCGACGCTGTTACAACAAGCTGGGCAAAAAACCACTCA
ATCCGTCATACAGCATACCGAGAAATATCATGAAACCTATACCACAATTGATAAAATTGTAGATAGTTTCTGGGAGCGTA
TTCCCTATTTATGTATTGCACTGGCAGTATTTCTTATTTTCTGGCTTTTAACCAAAGTTTTTAAGCTATTTATTGATAAA
ACCCTGACCAATCGCAGTTATACCCGCCAAAATCTGGTCTTGGTACTCAATCGAGTTGGTAGTGTTTTGATCATGTTTGT
GGGTTTCCTCATCGCACTGGTGATCGCCATTCCTGGTTTTACTCCAAGTCAGTTAGTCAGTGCATTGGGGATCGGTTCTG
TTGCCATTGGTTTTGCGTTTAAAGATATTTTTCAGAATCTCTTATCTGGTGTGCTGATTTTACTGAGTGAACCATTCCGT
ATTGGCGACGATATTATTGTCAATGGTATGGAAGGTACGGTTGAAGATATCCAAATTCGCGCGACCTTTTTACGCTCTCC
TGATGGTCGCCGTTTAGTCATCCCAAACGCCAATGTGTATACCAGCGCCATTACCGTGAATACCGCCTATCAGCGCCGTC
GCTGCGAGTTTGTGGTCGGAATTGGTTATGAAGATGACGAACAAAAAGCCAAATCGATTATCATGGATATTCTGAGCAAC
AACCGTAACGTACTGAGCCAGCCTGCGTTTAGTGTTAATGTTACTGCTTTGGCAGATTTCTCGGTCAACCTGACCGTACG
CTGGTGGGTGGATACCTCCGAAACTGGGATCGCAACATCAATCAGTGAAATACAGGCAGAAGTCAAAAAGGCCTTTAATG
CACAAAGAATTAATATTCCGTATCCAATTCAGGAACTAAAAGTCCATCAAAGTACGCCTGATGTTTTAACAGCGCCTCAA
TCTCAGGATACGTCAAACAAATAG

Upstream 100 bases:

>100_bases
ATTTCTAAACATAACCGCTGAAAGGTTGAGTGCTTAAAAACTTCATACTACACTTTCCCATTAACTCTCTCTCAACCCTT
TTATCACACCAGGAATTCGA

Downstream 100 bases:

>100_bases
TCGCCCCAATAGATAAGAAACGGCTGTTTCAGTTCTTAAAATCCGGCTGCCCAAGTGATAAGCCTGGCAGCCGTTTTTAA
TCAGTAAATCGACTTCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSEQNKLDQVASDTATLLQQAGQKTTQSVIQHTEKYHETYTTIDKIVDSFWERIPYLCIALAVFLIFWLLTKVFKLFIDK
TLTNRSYTRQNLVLVLNRVGSVLIMFVGFLIALVIAIPGFTPSQLVSALGIGSVAIGFAFKDIFQNLLSGVLILLSEPFR
IGDDIIVNGMEGTVEDIQIRATFLRSPDGRRLVIPNANVYTSAITVNTAYQRRRCEFVVGIGYEDDEQKAKSIIMDILSN
NRNVLSQPAFSVNVTALADFSVNLTVRWWVDTSETGIATSISEIQAEVKKAFNAQRINIPYPIQELKVHQSTPDVLTAPQ
SQDTSNK

Sequences:

>Translated_327_residues
MSEQNKLDQVASDTATLLQQAGQKTTQSVIQHTEKYHETYTTIDKIVDSFWERIPYLCIALAVFLIFWLLTKVFKLFIDK
TLTNRSYTRQNLVLVLNRVGSVLIMFVGFLIALVIAIPGFTPSQLVSALGIGSVAIGFAFKDIFQNLLSGVLILLSEPFR
IGDDIIVNGMEGTVEDIQIRATFLRSPDGRRLVIPNANVYTSAITVNTAYQRRRCEFVVGIGYEDDEQKAKSIIMDILSN
NRNVLSQPAFSVNVTALADFSVNLTVRWWVDTSETGIATSISEIQAEVKKAFNAQRINIPYPIQELKVHQSTPDVLTAPQ
SQDTSNK
>Mature_326_residues
SEQNKLDQVASDTATLLQQAGQKTTQSVIQHTEKYHETYTTIDKIVDSFWERIPYLCIALAVFLIFWLLTKVFKLFIDKT
LTNRSYTRQNLVLVLNRVGSVLIMFVGFLIALVIAIPGFTPSQLVSALGIGSVAIGFAFKDIFQNLLSGVLILLSEPFRI
GDDIIVNGMEGTVEDIQIRATFLRSPDGRRLVIPNANVYTSAITVNTAYQRRRCEFVVGIGYEDDEQKAKSIIMDILSNN
RNVLSQPAFSVNVTALADFSVNLTVRWWVDTSETGIATSISEIQAEVKKAFNAQRINIPYPIQELKVHQSTPDVLTAPQS
QDTSNK

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=257, Percent_Identity=25.2918287937743, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786670, Length=267, Percent_Identity=25.4681647940075, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI2367355, Length=210, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787591, Length=159, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 36497; Mature: 36366

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQNKLDQVASDTATLLQQAGQKTTQSVIQHTEKYHETYTTIDKIVDSFWERIPYLCIA
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVFLIFWLLTKVFKLFIDKTLTNRSYTRQNLVLVLNRVGSVLIMFVGFLIALVIAIPGF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TPSQLVSALGIGSVAIGFAFKDIFQNLLSGVLILLSEPFRIGDDIIVNGMEGTVEDIQIR
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHEE
ATFLRSPDGRRLVIPNANVYTSAITVNTAYQRRRCEFVVGIGYEDDEQKAKSIIMDILSN
EEEECCCCCCEEEECCCCEEEEEEEEEHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
NRNVLSQPAFSVNVTALADFSVNLTVRWWVDTSETGIATSISEIQAEVKKAFNAQRINIP
CCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
YPIQELKVHQSTPDVLTAPQSQDTSNK
CCHHHHEECCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
SEQNKLDQVASDTATLLQQAGQKTTQSVIQHTEKYHETYTTIDKIVDSFWERIPYLCIA
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVFLIFWLLTKVFKLFIDKTLTNRSYTRQNLVLVLNRVGSVLIMFVGFLIALVIAIPGF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TPSQLVSALGIGSVAIGFAFKDIFQNLLSGVLILLSEPFRIGDDIIVNGMEGTVEDIQIR
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHEE
ATFLRSPDGRRLVIPNANVYTSAITVNTAYQRRRCEFVVGIGYEDDEQKAKSIIMDILSN
EEEECCCCCCEEEECCCCEEEEEEEEEHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC
NRNVLSQPAFSVNVTALADFSVNLTVRWWVDTSETGIATSISEIQAEVKKAFNAQRINIP
CCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
YPIQELKVHQSTPDVLTAPQSQDTSNK
CCHHHHEECCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]