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The map label for this gene is ybgQ [C]

Identifier: 50086315

GI number: 50086315

Start: 3235250

End: 3237604

Strand: Reverse

Name: ybgQ [C]

Synonym: ACIAD3334

Alternate gene names: 50086315

Gene position: 3237604-3235250 (Counterclockwise)

Preceding gene: 50086316

Following gene: 50086314

Centisome position: 89.97

GC content: 38.39

Gene sequence:

>2355_bases
ATGTCTAAATTTGCTTATCTGCTTGGGGCAGGTGTAGGCATTACTTATGCATGGGTCACGCCCTATGCATATGCTGATGT
CTTATCTGAACAGCCTATACATCAAGATTTATATCTGGAAGTCACATTAAATAATGCACCTGTTCCAGATATTTTCCAAT
TTACTCAAGAGGGTAATTCATTATTTACATCTTTAGAAATATTACAGAAACTTGGAATAAATACCTCTGGATTATTTACA
CCGCAAACTGATATTCAACATATTGATCTTAAAACTGTTGCAGGTTTAACCTATGAATATGATGAAGCAGCACAAAAACT
GAATTTGCATGTTTCTCTCAATTTATTGAATCGTAAAAATGAATATGCATATGATAATAAAAAGGAAATAGCAAAACTAA
ACCCAGACCAGCAAAAGTTTGGGATGTTGATGAATTATGATGTTTATGCACAATCAATCGAAAACCAGCACGAGTTGAAT
TTGTGGAATGAAATGCGATTATTTGGTGTACAAGGTGGTCTATTAAGTATTTCATCAAGTTCGACATTCTCAAAATCATC
TGAAAATAATCAGTTCCGTTCTTATATTCTGGATACTTACTGGCAAAAAGATTATCCAGACCAATTAATGAGCTTGGTGA
TTGGGGATGCACAGTCAGCGGCATTTTCATGGGCACGTTCAACACGGATCAGTGGTATATCCCTGTCTAAAAACTATAAT
TTGCAGCCGTATCGTGTTGTAACTCCTTTATTAAAGTTTAAAGGGGAAAGTATTTTGCCTTCGACAGTTGATTTATTTAT
TGATGGTCTAAAACAAAATACACAATCGATTTCACCTGGTCAGTTTGAAATTCAAAGCAAGCCTACACTGAATGGAGCGG
GTAATGCTCAATTAGTGATTACAGATATTAATGGTGAGCAAAAAACCTTGAGTTTTAAGTTGTATGGTACAAAATCTTTA
TTACAAAAAGGGCTAGATGAATGGTCGTTTAATCTAGGGGTAACCAAGTTAGACTATGCTACAGCATCTTTTCACTATGA
TGATCAGCCATTATTCAATGGTAATTACCGTTATGGTTTAAACGCACATACCACAGTGGAATTACATTCAGAACTTAGTC
CGCAGCTTGGTTTATTGGGCGCTGGTGTGGTGCAACAGCTTGGAACACGGGGTGGTGTAGTCAATGCTGCCTATGCCTAT
AGTCAACATCAAGAGGATCAGGGTGGTTTATATCAACTTGGTTATAGCTGGAGTTCCAGAAACTTTAATTTTTCGTACAA
TACCTTTAAGCAGCAAGGTACATATACAGATATTGCTGGATTAATGGGATATGCTTTTCCAGAAAAAATGGATCAGGTTT
ATCTGGGTTTCTATACGCGTTTTGGGCAGTTTGGTGGAAGTTATATTGCACAGCGTTATGCTCTTGATCACACGTCCAGT
CGCTATGCATCTTTTACGTGGTCTCAAACATTTCAGTCACATGCCAATCTGAGTCTGAGCTATAACTATAATATTGAACA
GCGTCAAAATGAAATTTATCTTGGATTCTCATTTCCATGGGCGCAACGTAAATCTGTAACGGTCAGTACCCAAAATACAG
CGGGAAGGCAGCAAAGCTCTGCAACCTTCATGCAATCGATTAATCAGGATCGTGGTGGTTGGGGCGGGCAATTACGTGTG
AATCAATATGATGATGGACAGAGTTATTTAGGACGACTGGGTTATCTGGGCAATTCTTCAGAGATGGCAATCGAGTTACA
ACAATCACAGTTTTCGGGTCAGCAACAAACTGCTATAAGCGCATCTCTCGATGGATCTTTGCTGTGGATGGGAGGGCAAT
TTGCACCGATGCGTAGAAGTCTGGGGGCATTTGCACTGGTTTCAACATCGGGGATCCCTCATGTGCCTGTGATGCTTGAA
AATCGTAACGTGGGCTATACCAATGATCAAGGTTTTTTGCTGGTCAATAGTTTAAATGCCTATCAGCATAATAAGCTTTC
AATTGATACTTTAAAGTTACCATTAGATTTACAAATCAAGGAAACACAACTGGATGGCGTTCCTCGTCAATCCAGTGGGA
TTCTGGTTAATTTTCCGATCTATAAAATGATCTCAATTCAAATGCAAGTCATCGATATTAATGGCAATATAGTCGAAATG
GGAAGTCCAGTGTTTCGCTCGTCAGATCAACAAGAAATTGAAACAGTCGTAGGACGGGAAGGGATCGTATATTTCGAAAA
CCCAGCTCAGCGTCACTTTTTTATCCAGAATAATCATCAACATTGTCAGATCACATTACCTGAATTAAAAGATAAGTCTG
GATTTGTTGATTTGGGGAAAGTCACATGTCAATAA

Upstream 100 bases:

>100_bases
AAAGGCATTGCTATTTCGCCAAAAGGGCATTTTGAAGCGTTGATTAATTCAGATGATATTGCACAACCCTTGCCGCTAAC
ACCTTAATTTTTAGTATTCA

Downstream 100 bases:

>100_bases
TTCACAGCAATTGTATAATCGCTCAGATTTCCAAAAATGCATATTTATTTAGGAGCCTTGTTGTTGTGCTGCTTTGTTTG
GGCTGTAAAAGTGTATATGC

Product: porin

Products: NA

Alternate protein names: Fimbrial Usher Protein; Outer Membrane Usher Protein; Type 1 Pili Usher Protein CsuD; P Pilus Assembly Protein Porin PapC; Fimbriae Usher Protein; Outer Membrane Usher Protein FasD; Type I Pili Usher Protein CsuD; P Pilus Assembly Fimbrial Usher Protein; Outer Membrane Usher Protein FimD; Fimbrial Biogenesis Protein; CsuD Protein Fimbrial Usher Proteins; Fimbrial Usher Family; Outer Membrane Usher Transmembrane Protein; P Pilus Assembly Protein Porin PapC Protein; Type I Pili; P Pilus Assembly Protein FimD; Outer Membrane Fimbrial Usher Porin Family Protein; Type 1 Pili Usher Protein FimD; Fimbrial Outer Membrane Usher Protein; PapC Family Outer Membrane Usher Protein; Signal Peptide Protein; Porin Protein Involved In Fimbrial Biogenesis; Outer Membrane Usher Protein SefC; Fimbriae-Like Protein; CsuD Protein; Fimbrial Biogenesis Outer Membrane Usher Protein Papc; Fimbriae-Related Protein

Number of amino acids: Translated: 784; Mature: 783

Protein sequence:

>784_residues
MSKFAYLLGAGVGITYAWVTPYAYADVLSEQPIHQDLYLEVTLNNAPVPDIFQFTQEGNSLFTSLEILQKLGINTSGLFT
PQTDIQHIDLKTVAGLTYEYDEAAQKLNLHVSLNLLNRKNEYAYDNKKEIAKLNPDQQKFGMLMNYDVYAQSIENQHELN
LWNEMRLFGVQGGLLSISSSSTFSKSSENNQFRSYILDTYWQKDYPDQLMSLVIGDAQSAAFSWARSTRISGISLSKNYN
LQPYRVVTPLLKFKGESILPSTVDLFIDGLKQNTQSISPGQFEIQSKPTLNGAGNAQLVITDINGEQKTLSFKLYGTKSL
LQKGLDEWSFNLGVTKLDYATASFHYDDQPLFNGNYRYGLNAHTTVELHSELSPQLGLLGAGVVQQLGTRGGVVNAAYAY
SQHQEDQGGLYQLGYSWSSRNFNFSYNTFKQQGTYTDIAGLMGYAFPEKMDQVYLGFYTRFGQFGGSYIAQRYALDHTSS
RYASFTWSQTFQSHANLSLSYNYNIEQRQNEIYLGFSFPWAQRKSVTVSTQNTAGRQQSSATFMQSINQDRGGWGGQLRV
NQYDDGQSYLGRLGYLGNSSEMAIELQQSQFSGQQQTAISASLDGSLLWMGGQFAPMRRSLGAFALVSTSGIPHVPVMLE
NRNVGYTNDQGFLLVNSLNAYQHNKLSIDTLKLPLDLQIKETQLDGVPRQSSGILVNFPIYKMISIQMQVIDINGNIVEM
GSPVFRSSDQQEIETVVGREGIVYFENPAQRHFFIQNNHQHCQITLPELKDKSGFVDLGKVTCQ

Sequences:

>Translated_784_residues
MSKFAYLLGAGVGITYAWVTPYAYADVLSEQPIHQDLYLEVTLNNAPVPDIFQFTQEGNSLFTSLEILQKLGINTSGLFT
PQTDIQHIDLKTVAGLTYEYDEAAQKLNLHVSLNLLNRKNEYAYDNKKEIAKLNPDQQKFGMLMNYDVYAQSIENQHELN
LWNEMRLFGVQGGLLSISSSSTFSKSSENNQFRSYILDTYWQKDYPDQLMSLVIGDAQSAAFSWARSTRISGISLSKNYN
LQPYRVVTPLLKFKGESILPSTVDLFIDGLKQNTQSISPGQFEIQSKPTLNGAGNAQLVITDINGEQKTLSFKLYGTKSL
LQKGLDEWSFNLGVTKLDYATASFHYDDQPLFNGNYRYGLNAHTTVELHSELSPQLGLLGAGVVQQLGTRGGVVNAAYAY
SQHQEDQGGLYQLGYSWSSRNFNFSYNTFKQQGTYTDIAGLMGYAFPEKMDQVYLGFYTRFGQFGGSYIAQRYALDHTSS
RYASFTWSQTFQSHANLSLSYNYNIEQRQNEIYLGFSFPWAQRKSVTVSTQNTAGRQQSSATFMQSINQDRGGWGGQLRV
NQYDDGQSYLGRLGYLGNSSEMAIELQQSQFSGQQQTAISASLDGSLLWMGGQFAPMRRSLGAFALVSTSGIPHVPVMLE
NRNVGYTNDQGFLLVNSLNAYQHNKLSIDTLKLPLDLQIKETQLDGVPRQSSGILVNFPIYKMISIQMQVIDINGNIVEM
GSPVFRSSDQQEIETVVGREGIVYFENPAQRHFFIQNNHQHCQITLPELKDKSGFVDLGKVTCQ
>Mature_783_residues
SKFAYLLGAGVGITYAWVTPYAYADVLSEQPIHQDLYLEVTLNNAPVPDIFQFTQEGNSLFTSLEILQKLGINTSGLFTP
QTDIQHIDLKTVAGLTYEYDEAAQKLNLHVSLNLLNRKNEYAYDNKKEIAKLNPDQQKFGMLMNYDVYAQSIENQHELNL
WNEMRLFGVQGGLLSISSSSTFSKSSENNQFRSYILDTYWQKDYPDQLMSLVIGDAQSAAFSWARSTRISGISLSKNYNL
QPYRVVTPLLKFKGESILPSTVDLFIDGLKQNTQSISPGQFEIQSKPTLNGAGNAQLVITDINGEQKTLSFKLYGTKSLL
QKGLDEWSFNLGVTKLDYATASFHYDDQPLFNGNYRYGLNAHTTVELHSELSPQLGLLGAGVVQQLGTRGGVVNAAYAYS
QHQEDQGGLYQLGYSWSSRNFNFSYNTFKQQGTYTDIAGLMGYAFPEKMDQVYLGFYTRFGQFGGSYIAQRYALDHTSSR
YASFTWSQTFQSHANLSLSYNYNIEQRQNEIYLGFSFPWAQRKSVTVSTQNTAGRQQSSATFMQSINQDRGGWGGQLRVN
QYDDGQSYLGRLGYLGNSSEMAIELQQSQFSGQQQTAISASLDGSLLWMGGQFAPMRRSLGAFALVSTSGIPHVPVMLEN
RNVGYTNDQGFLLVNSLNAYQHNKLSIDTLKLPLDLQIKETQLDGVPRQSSGILVNFPIYKMISIQMQVIDINGNIVEMG
SPVFRSSDQQEIETVVGREGIVYFENPAQRHFFIQNNHQHCQITLPELKDKSGFVDLGKVTCQ

Specific function: Could Be Involved In The Export And Assembly Of The Putative Ybgd Fimbrial Subunit Across The Outer Membrane. [C]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081778, Length=744, Percent_Identity=20.2956989247312, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87948; Mature: 87816

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFAYLLGAGVGITYAWVTPYAYADVLSEQPIHQDLYLEVTLNNAPVPDIFQFTQEGNS
CCCEEEEHCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCH
LFTSLEILQKLGINTSGLFTPQTDIQHIDLKTVAGLTYEYDEAAQKLNLHVSLNLLNRKN
HHHHHHHHHHHCCCCCCEECCCCCCEEECCHHHCCCEEEHHHHHHEEEEEEEEEEECCCC
EYAYDNKKEIAKLNPDQQKFGMLMNYDVYAQSIENQHELNLWNEMRLFGVQGGLLSISSS
CCCCCCCHHHHCCCCCHHHHCEEEECHHHHHHHCCCCCCCHHHHEEEEEECCCEEEECCC
STFSKSSENNQFRSYILDTYWQKDYPDQLMSLVIGDAQSAAFSWARSTRISGISLSKNYN
CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCEECEEEECCCCC
LQPYRVVTPLLKFKGESILPSTVDLFIDGLKQNTQSISPGQFEIQSKPTLNGAGNAQLVI
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEE
TDINGEQKTLSFKLYGTKSLLQKGLDEWSFNLGVTKLDYATASFHYDDQPLFNGNYRYGL
EECCCCCEEEEEEEECCHHHHHCCCHHCEECCCCEEEEEEEEEEECCCCCEECCCEEECC
NAHTTVELHSELSPQLGLLGAGVVQQLGTRGGVVNAAYAYSQHQEDQGGLYQLGYSWSSR
CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCEEEEEEEECCC
NFNFSYNTFKQQGTYTDIAGLMGYAFPEKMDQVYLGFYTRFGQFGGSYIAQRYALDHTSS
CEEEEECCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
RYASFTWSQTFQSHANLSLSYNYNIEQRQNEIYLGFSFPWAQRKSVTVSTQNTAGRQQSS
CEEEEEHHHHHHHCCCEEEEEECCHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHH
ATFMQSINQDRGGWGGQLRVNQYDDGQSYLGRLGYLGNSSEMAIELQQSQFSGQQQTAIS
HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCEEEEEEHHHCCCCHHEEEE
ASLDGSLLWMGGQFAPMRRSLGAFALVSTSGIPHVPVMLENRNVGYTNDQGFLLVNSLNA
ECCCCEEEEECCCCCHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCC
YQHNKLSIDTLKLPLDLQIKETQLDGVPRQSSGILVNFPIYKMISIQMQVIDINGNIVEM
CCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEEECCCEEEEEEEEEEEEECCCEEEC
GSPVFRSSDQQEIETVVGREGIVYFENPAQRHFFIQNNHQHCQITLPELKDKSGFVDLGK
CCHHHCCCCHHHHHHHHCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCEEECC
VTCQ
EECC
>Mature Secondary Structure 
SKFAYLLGAGVGITYAWVTPYAYADVLSEQPIHQDLYLEVTLNNAPVPDIFQFTQEGNS
CCEEEEHCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCH
LFTSLEILQKLGINTSGLFTPQTDIQHIDLKTVAGLTYEYDEAAQKLNLHVSLNLLNRKN
HHHHHHHHHHHCCCCCCEECCCCCCEEECCHHHCCCEEEHHHHHHEEEEEEEEEEECCCC
EYAYDNKKEIAKLNPDQQKFGMLMNYDVYAQSIENQHELNLWNEMRLFGVQGGLLSISSS
CCCCCCCHHHHCCCCCHHHHCEEEECHHHHHHHCCCCCCCHHHHEEEEEECCCEEEECCC
STFSKSSENNQFRSYILDTYWQKDYPDQLMSLVIGDAQSAAFSWARSTRISGISLSKNYN
CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCEECEEEECCCCC
LQPYRVVTPLLKFKGESILPSTVDLFIDGLKQNTQSISPGQFEIQSKPTLNGAGNAQLVI
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEE
TDINGEQKTLSFKLYGTKSLLQKGLDEWSFNLGVTKLDYATASFHYDDQPLFNGNYRYGL
EECCCCCEEEEEEEECCHHHHHCCCHHCEECCCCEEEEEEEEEEECCCCCEECCCEEECC
NAHTTVELHSELSPQLGLLGAGVVQQLGTRGGVVNAAYAYSQHQEDQGGLYQLGYSWSSR
CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCEEEEEEEECCC
NFNFSYNTFKQQGTYTDIAGLMGYAFPEKMDQVYLGFYTRFGQFGGSYIAQRYALDHTSS
CEEEEECCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCC
RYASFTWSQTFQSHANLSLSYNYNIEQRQNEIYLGFSFPWAQRKSVTVSTQNTAGRQQSS
CEEEEEHHHHHHHCCCEEEEEECCHHCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHH
ATFMQSINQDRGGWGGQLRVNQYDDGQSYLGRLGYLGNSSEMAIELQQSQFSGQQQTAIS
HHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCEEEEEEHHHCCCCHHEEEE
ASLDGSLLWMGGQFAPMRRSLGAFALVSTSGIPHVPVMLENRNVGYTNDQGFLLVNSLNA
ECCCCEEEEECCCCCHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCC
YQHNKLSIDTLKLPLDLQIKETQLDGVPRQSSGILVNFPIYKMISIQMQVIDINGNIVEM
CCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEEECCCEEEEEEEEEEEEECCCEEEC
GSPVFRSSDQQEIETVVGREGIVYFENPAQRHFFIQNNHQHCQITLPELKDKSGFVDLGK
CCHHHCCCCHHHHHHHHCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCEEECC
VTCQ
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA