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The map label for this gene is rbn [C]

Identifier: 50086169

GI number: 50086169

Start: 3095748

End: 3097007

Strand: Direct

Name: rbn [C]

Synonym: ACIAD3168

Alternate gene names: 50086169

Gene position: 3095748-3097007 (Clockwise)

Preceding gene: 50086166

Following gene: 50086171

Centisome position: 86.03

GC content: 38.65

Gene sequence:

>1260_bases
TTGGGACATTATTTTATGCTGAATCTGCTCAAGAAATTACCCTTTTATGAAAAAACATGGTTCCAGTTCATTCTATTTGT
TTTAAGACGTTTTGAGGCAGATCGTTGTCGTGAACATGCAGGGGCTTTAACATATACCACACTGTTTGCCGTGGTTCCCA
TGCTAACTGTCTTTCTTGTGATTATCTCTTCCATTAAAGCGTTAGAACCCGCCAGACAGCAATTACAACAACTTATTTAT
AGTAATTTTCTACCTAAAAGCACGATTGCCTTTGATCGTGTTTTAAATTCATTTACAGAAAAATCAAGCAACCTGACTGT
TATTGGTATTTTATTTCTATTTGTCACCACAGTGATGATGTTGAGTACCATTGAAACCGCATTTAATCGTATTTGGCGGG
TCAAGGAAACCCGAAGTGGAATTATTGGTTTTATGCGTTACTGGACCATTATCTCATTGGGACCCATCATTTTAGGAAGT
GCCTTCGTTATTTCTTCAACTGTGGCTTCGATGAATATCCTCAGCAACAACTTTGCAGGTTATGAATTGAGCGGCGCATT
TATTTTATGGCTCATCTCCTTTGGACTGACCATTTTAGGTTTCTTCATTTTATACTGGACGATTCCGAATCGTACCGTTC
CAATGTACGCCGCTATCATCGCGGCCTGCTTTAGCGCTGCCATTTTTGAGTTGCTCAAAAATATCTTTGGCTTTGCGATG
TCAAATTTCACCAGTTATGAACTGGTCTATGGTGCATTTGCTGCTATCCCAATTTTCTTATTATGGATATTTTTATCATG
GAATATTGTCTTACTGGGTGTTGAAGTGAGCTATGCTCTCACTGCTTTTCATTCTGACAAGATCCAGACCAGACATCCTG
TGCTGATGCTATTAGACGTACTGGAACTGTTTTATAAAAAACAGAAACTCGGCCAAAGCGTAACTGATCTAGAAGCACTG
GATATTATGGGGCGTGGCGAGATTGGTCGATGGCCAAGTTATATCGAATTACTTGAGAAACAAAATCTGATTAAACGCAC
AGATAAAGATGAATACGTTTTAGTGCGAAATTTATCTCAAGTCGATTTTTGGACATTTTTTACGGCTCTTCCTTATCCTT
TACCTTTACGTAAAGATGTTGGCAATATCCATCCCGATGATGAATGGATGCAAAAAATAGGGCCAGCTTTGATTGAGGCA
GATGACTATCTGGCTGCCAAATTATCCATTCCATTATCAACTTTATTTGAAGCCAAATAA

Upstream 100 bases:

>100_bases
CATTTTTTAAAAATTTGTTAAAAAGAAAACTATACGATATTTGTGCTGGTTTTTGGCTAAGCTTTCATATTGAAACGAAA
TAAACATCAAGATTATAAAA

Downstream 100 bases:

>100_bases
TTTAAACTCTAAGGCCTGATCAGATCATCAGGCCTTTTTTAGTACAACGCTTAGATGCCGTCAGGCTGTATACCCTTGAT
ATTGCTGAATCAATAATGAA

Product: ribonuclease (Rbn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MGHYFMLNLLKKLPFYEKTWFQFILFVLRRFEADRCREHAGALTYTTLFAVVPMLTVFLVIISSIKALEPARQQLQQLIY
SNFLPKSTIAFDRVLNSFTEKSSNLTVIGILFLFVTTVMMLSTIETAFNRIWRVKETRSGIIGFMRYWTIISLGPIILGS
AFVISSTVASMNILSNNFAGYELSGAFILWLISFGLTILGFFILYWTIPNRTVPMYAAIIAACFSAAIFELLKNIFGFAM
SNFTSYELVYGAFAAIPIFLLWIFLSWNIVLLGVEVSYALTAFHSDKIQTRHPVLMLLDVLELFYKKQKLGQSVTDLEAL
DIMGRGEIGRWPSYIELLEKQNLIKRTDKDEYVLVRNLSQVDFWTFFTALPYPLPLRKDVGNIHPDDEWMQKIGPALIEA
DDYLAAKLSIPLSTLFEAK

Sequences:

>Translated_419_residues
MGHYFMLNLLKKLPFYEKTWFQFILFVLRRFEADRCREHAGALTYTTLFAVVPMLTVFLVIISSIKALEPARQQLQQLIY
SNFLPKSTIAFDRVLNSFTEKSSNLTVIGILFLFVTTVMMLSTIETAFNRIWRVKETRSGIIGFMRYWTIISLGPIILGS
AFVISSTVASMNILSNNFAGYELSGAFILWLISFGLTILGFFILYWTIPNRTVPMYAAIIAACFSAAIFELLKNIFGFAM
SNFTSYELVYGAFAAIPIFLLWIFLSWNIVLLGVEVSYALTAFHSDKIQTRHPVLMLLDVLELFYKKQKLGQSVTDLEAL
DIMGRGEIGRWPSYIELLEKQNLIKRTDKDEYVLVRNLSQVDFWTFFTALPYPLPLRKDVGNIHPDDEWMQKIGPALIEA
DDYLAAKLSIPLSTLFEAK
>Mature_418_residues
GHYFMLNLLKKLPFYEKTWFQFILFVLRRFEADRCREHAGALTYTTLFAVVPMLTVFLVIISSIKALEPARQQLQQLIYS
NFLPKSTIAFDRVLNSFTEKSSNLTVIGILFLFVTTVMMLSTIETAFNRIWRVKETRSGIIGFMRYWTIISLGPIILGSA
FVISSTVASMNILSNNFAGYELSGAFILWLISFGLTILGFFILYWTIPNRTVPMYAAIIAACFSAAIFELLKNIFGFAMS
NFTSYELVYGAFAAIPIFLLWIFLSWNIVLLGVEVSYALTAFHSDKIQTRHPVLMLLDVLELFYKKQKLGQSVTDLEALD
IMGRGEIGRWPSYIELLEKQNLIKRTDKDEYVLVRNLSQVDFWTFFTALPYPLPLRKDVGNIHPDDEWMQKIGPALIEAD
DYLAAKLSIPLSTLFEAK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=259, Percent_Identity=32.046332046332, Blast_Score=151, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3168_ACIAD (Q6F7V8)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_047679.1
- STRING:   Q6F7V8
- GeneID:   2879663
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD3168
- NMPDR:   fig|62977.3.peg.2872
- HOGENOM:   HBG451793
- OMA:   FLLYWAI
- PhylomeDB:   Q6F7V8
- ProtClustDB:   CLSK830742
- BioCyc:   ASP62977:ACIAD3168-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47948; Mature: 47817

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x197f32c8)-; HASH(0x1ab66e48)-; HASH(0xd153d58)-; HASH(0x1aef2dac)-; HASH(0x1a6457c0)-; HASH(0x1ad9f3f0)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHYFMLNLLKKLPFYEKTWFQFILFVLRRFEADRCREHAGALTYTTLFAVVPMLTVFLV
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IISSIKALEPARQQLQQLIYSNFLPKSTIAFDRVLNSFTEKSSNLTVIGILFLFVTTVMM
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LSTIETAFNRIWRVKETRSGIIGFMRYWTIISLGPIILGSAFVISSTVASMNILSNNFAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YELSGAFILWLISFGLTILGFFILYWTIPNRTVPMYAAIIAACFSAAIFELLKNIFGFAM
EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNFTSYELVYGAFAAIPIFLLWIFLSWNIVLLGVEVSYALTAFHSDKIQTRHPVLMLLDV
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHH
LELFYKKQKLGQSVTDLEALDIMGRGEIGRWPSYIELLEKQNLIKRTDKDEYVLVRNLSQ
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCH
VDFWTFFTALPYPLPLRKDVGNIHPDDEWMQKIGPALIEADDYLAAKLSIPLSTLFEAK
HHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHCHHHCCCCCHHHHHHCCCHHHHHCCH
>Mature Secondary Structure 
GHYFMLNLLKKLPFYEKTWFQFILFVLRRFEADRCREHAGALTYTTLFAVVPMLTVFLV
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IISSIKALEPARQQLQQLIYSNFLPKSTIAFDRVLNSFTEKSSNLTVIGILFLFVTTVMM
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LSTIETAFNRIWRVKETRSGIIGFMRYWTIISLGPIILGSAFVISSTVASMNILSNNFAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YELSGAFILWLISFGLTILGFFILYWTIPNRTVPMYAAIIAACFSAAIFELLKNIFGFAM
EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNFTSYELVYGAFAAIPIFLLWIFLSWNIVLLGVEVSYALTAFHSDKIQTRHPVLMLLDV
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHH
LELFYKKQKLGQSVTDLEALDIMGRGEIGRWPSYIELLEKQNLIKRTDKDEYVLVRNLSQ
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCH
VDFWTFFTALPYPLPLRKDVGNIHPDDEWMQKIGPALIEADDYLAAKLSIPLSTLFEAK
HHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHCHHHCCCCCHHHHHHCCCHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA