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The map label for this gene is ybeY [C]

Identifier: 50086161

GI number: 50086161

Start: 3088290

End: 3088769

Strand: Direct

Name: ybeY [C]

Synonym: ACIAD3160

Alternate gene names: 50086161

Gene position: 3088290-3088769 (Clockwise)

Preceding gene: 50086160

Following gene: 50086163

Centisome position: 85.82

GC content: 40.0

Gene sequence:

>480_bases
TTGAAACTTAATCTTAGTTTGCAGCAAGCGTTTAAATCTCCCGATTTAGCCTTAAAACGTGCTCACATCAAAAAAGCCAT
TGAAACAACTTTAGATCATGTCGAAGTTAAAACTGACAGTGAAATCGGTATCGCCTGTGTAGATCACGAACAAAGTCATC
GTTTGAATCTTGAATATCGGGGCAAGGATAAATCAACCAATGTTTTGTCTTTTCCAAGCGATATTCCTGAAGAAGTTTTA
CCTTTGCTGGATGCCCGTCCTTTAGGTGATCTGGTGATTTGTATTCCAGTGGTATTAGATGAAGCCATTGAGCAGCATAA
AACAGCTCAGGCTCATTTTATGCATATGCTGGTACATGGCACCTTACACTTACTGGGCTACGACCACGAAACCAGCGATG
AAGATGCCGAAGAAATGGAAGCTCTGGAAATTGAGATTCTGGCGAAATTAGGATTAGAGAATCCTTATCAAGAACAATAA

Upstream 100 bases:

>100_bases
AGCATCAGGAAGCTTAAGTCTTTCATTTTAGGTTCACTTTAATAAAACACTTAAATCAGGGGATTGCCATGCACTCCCCT
ATTTTTATGAAGGATCAGGT

Downstream 100 bases:

>100_bases
AACAAAGAGCCAATGAGCAATTGCTGTGATCATTGGCTCTTTTTTAGAAATGATATCTAAACGTTAAGGTTGCATTACGT
GGTGCACCCTGAGTGATCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKLNLSLQQAFKSPDLALKRAHIKKAIETTLDHVEVKTDSEIGIACVDHEQSHRLNLEYRGKDKSTNVLSFPSDIPEEVL
PLLDARPLGDLVICIPVVLDEAIEQHKTAQAHFMHMLVHGTLHLLGYDHETSDEDAEEMEALEIEILAKLGLENPYQEQ

Sequences:

>Translated_159_residues
MKLNLSLQQAFKSPDLALKRAHIKKAIETTLDHVEVKTDSEIGIACVDHEQSHRLNLEYRGKDKSTNVLSFPSDIPEEVL
PLLDARPLGDLVICIPVVLDEAIEQHKTAQAHFMHMLVHGTLHLLGYDHETSDEDAEEMEALEIEILAKLGLENPYQEQ
>Mature_159_residues
MKLNLSLQQAFKSPDLALKRAHIKKAIETTLDHVEVKTDSEIGIACVDHEQSHRLNLEYRGKDKSTNVLSFPSDIPEEVL
PLLDARPLGDLVICIPVVLDEAIEQHKTAQAHFMHMLVHGTLHLLGYDHETSDEDAEEMEALEIEILAKLGLENPYQEQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=132, Percent_Identity=55.3030303030303, Blast_Score=117, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ACIAD (Q6F7W6)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_047671.1
- ProteinModelPortal:   Q6F7W6
- SMR:   Q6F7W6
- STRING:   Q6F7W6
- GeneID:   2879657
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD3160
- NMPDR:   fig|62977.3.peg.2864
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   HGILHIT
- PhylomeDB:   Q6F7W6
- ProtClustDB:   CLSK707785
- BioCyc:   ASP62977:ACIAD3160-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17923; Mature: 17923

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNLSLQQAFKSPDLALKRAHIKKAIETTLDHVEVKTDSEIGIACVDHEQSHRLNLEYR
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCCCCEECEEEC
GKDKSTNVLSFPSDIPEEVLPLLDARPLGDLVICIPVVLDEAIEQHKTAQAHFMHMLVHG
CCCCCCCEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLHLLGYDHETSDEDAEEMEALEIEILAKLGLENPYQEQ
HHHEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKLNLSLQQAFKSPDLALKRAHIKKAIETTLDHVEVKTDSEIGIACVDHEQSHRLNLEYR
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCCCCEECEEEC
GKDKSTNVLSFPSDIPEEVLPLLDARPLGDLVICIPVVLDEAIEQHKTAQAHFMHMLVHG
CCCCCCCEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLHLLGYDHETSDEDAEEMEALEIEILAKLGLENPYQEQ
HHHEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA