Click here to switch to the map view.

The map label for this gene is yjjV [H]

Identifier: 50086101

GI number: 50086101

Start: 3017386

End: 3018204

Strand: Reverse

Name: yjjV [H]

Synonym: ACIAD3091

Alternate gene names: 50086101

Gene position: 3018204-3017386 (Counterclockwise)

Preceding gene: 50086102

Following gene: 50086100

Centisome position: 83.87

GC content: 42.74

Gene sequence:

>819_bases
ATGTTACGTCTGTTTGATACACACACGCATTTTGATGTTCCAGATTTTGATGCAGATCGTATCTTGCTGGCGCAACAGGC
AAAAAACGCGGGTGTCGATGCGCTGGTGCTGATTGGTTTCGTTGCATCACGGTTTGATGATCTTATTGCCACACAAAATC
AGCTTATGAACTTGGATAATGCACCTATGAGCTATTTGGCACCAGGTCTGCATCCGTTTTATATCGAACAGCATTTACCT
GTACACCTTGAGCAACTTGAGCAGATTTTGAGGCAGAAAACCTGTGTTGCAATTGGGGAAATTGGTCTAGATACGTTCCT
GCCACAGCACAAACAACCCGATATTTACCAAAAACAACAGCAATATTTCTCGGCACAATTAGATTTGGCAGTGCAGTATG
ATAAGCCTGTACTCTTGCATATCCGAAAATCTCATGGCGACGTAATTCGGTTAATTAAGCAGCATCATTTTAAATTGGGC
GGTATCGCCCATGCTTTTAGTGGTGGTATAGAAGAAGCGAAAGCCTTAATCAAGCTTGGTTTTAAATTGGGCGTGACAGG
GCAGATTACCAATCCAAATGCCAAAAAGCTTTATCAGGTTATACAAACTGTAGGGGCCGAGCATCTGGTGATTGAAACAG
ATTGTCCTGATATGACCCCTTTATGTTGCCAGACATCGACTGAACATCGAACGCGTAACACACCTGTTAATTTACCTTAC
GTACTGGCTGGGCTGGCTCAGGTTTTAGCTATGGATTCAATTCAACTGGCGCAGAAGTTATGGGAAAACTCTTTAAGTGC
ACTGAGATTAAATCCATAA

Upstream 100 bases:

>100_bases
TGGATTACCACGCTTGGTGGTTCCCTATGATCAATTGAATACGATTTTAAAACCAGAATATCTGCCGACACAGTCCACAT
CTGTAAAAGGCTCTTAAATC

Downstream 100 bases:

>100_bases
AAACAACAGTCTCAAAAACAATAACCAAAACAGAACACTCTTGATGTAAAAGTGGCATACATTAGAAATACAACAGATAA
AATCTTTAAAAAACAGATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLRLFDTHTHFDVPDFDADRILLAQQAKNAGVDALVLIGFVASRFDDLIATQNQLMNLDNAPMSYLAPGLHPFYIEQHLP
VHLEQLEQILRQKTCVAIGEIGLDTFLPQHKQPDIYQKQQQYFSAQLDLAVQYDKPVLLHIRKSHGDVIRLIKQHHFKLG
GIAHAFSGGIEEAKALIKLGFKLGVTGQITNPNAKKLYQVIQTVGAEHLVIETDCPDMTPLCCQTSTEHRTRNTPVNLPY
VLAGLAQVLAMDSIQLAQKLWENSLSALRLNP

Sequences:

>Translated_272_residues
MLRLFDTHTHFDVPDFDADRILLAQQAKNAGVDALVLIGFVASRFDDLIATQNQLMNLDNAPMSYLAPGLHPFYIEQHLP
VHLEQLEQILRQKTCVAIGEIGLDTFLPQHKQPDIYQKQQQYFSAQLDLAVQYDKPVLLHIRKSHGDVIRLIKQHHFKLG
GIAHAFSGGIEEAKALIKLGFKLGVTGQITNPNAKKLYQVIQTVGAEHLVIETDCPDMTPLCCQTSTEHRTRNTPVNLPY
VLAGLAQVLAMDSIQLAQKLWENSLSALRLNP
>Mature_272_residues
MLRLFDTHTHFDVPDFDADRILLAQQAKNAGVDALVLIGFVASRFDDLIATQNQLMNLDNAPMSYLAPGLHPFYIEQHLP
VHLEQLEQILRQKTCVAIGEIGLDTFLPQHKQPDIYQKQQQYFSAQLDLAVQYDKPVLLHIRKSHGDVIRLIKQHHFKLG
GIAHAFSGGIEEAKALIKLGFKLGVTGQITNPNAKKLYQVIQTVGAEHLVIETDCPDMTPLCCQTSTEHRTRNTPVNLPY
VLAGLAQVLAMDSIQLAQKLWENSLSALRLNP

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=239, Percent_Identity=27.1966527196653, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI225903439, Length=239, Percent_Identity=27.1966527196653, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI225903424, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87082439, Length=270, Percent_Identity=36.2962962962963, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI48994985, Length=256, Percent_Identity=29.296875, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787342, Length=270, Percent_Identity=26.6666666666667, Blast_Score=95, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=298, Percent_Identity=26.1744966442953, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=24.4274809160305, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI221330018, Length=192, Percent_Identity=30.2083333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24586117, Length=192, Percent_Identity=30.2083333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=25.1798561151079, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30454; Mature: 30454

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLFDTHTHFDVPDFDADRILLAQQAKNAGVDALVLIGFVASRFDDLIATQNQLMNLDN
CCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
APMSYLAPGLHPFYIEQHLPVHLEQLEQILRQKTCVAIGEIGLDTFLPQHKQPDIYQKQQ
CCHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHH
QYFSAQLDLAVQYDKPVLLHIRKSHGDVIRLIKQHHFKLGGIAHAFSGGIEEAKALIKLG
HHHHHHHEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHH
FKLGVTGQITNPNAKKLYQVIQTVGAEHLVIETDCPDMTPLCCQTSTEHRTRNTPVNLPY
HHCCCEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCHHCCCCCCCCCHH
VLAGLAQVLAMDSIQLAQKLWENSLSALRLNP
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
>Mature Secondary Structure
MLRLFDTHTHFDVPDFDADRILLAQQAKNAGVDALVLIGFVASRFDDLIATQNQLMNLDN
CCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
APMSYLAPGLHPFYIEQHLPVHLEQLEQILRQKTCVAIGEIGLDTFLPQHKQPDIYQKQQ
CCHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHH
QYFSAQLDLAVQYDKPVLLHIRKSHGDVIRLIKQHHFKLGGIAHAFSGGIEEAKALIKLG
HHHHHHHEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHH
FKLGVTGQITNPNAKKLYQVIQTVGAEHLVIETDCPDMTPLCCQTSTEHRTRNTPVNLPY
HHCCCEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCHHCCCCCCCCCHH
VLAGLAQVLAMDSIQLAQKLWENSLSALRLNP
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]