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The map label for this gene is ygdL [C]

Identifier: 50086098

GI number: 50086098

Start: 3013044

End: 3013817

Strand: Reverse

Name: ygdL [C]

Synonym: ACIAD3088

Alternate gene names: 50086098

Gene position: 3013817-3013044 (Counterclockwise)

Preceding gene: 50086099

Following gene: 50086093

Centisome position: 83.75

GC content: 42.51

Gene sequence:

>774_bases
ATGACGACCAATCTCCAGACCGATGAATATGACCGCCGTTTTGCGGGTGTTGCCAAAATTTATGGTGATGATGCATTTAA
TCACTATGAAAAAAGTCATGTGATGGTGATTGGAATTGGTGGTGTCGGAAGCTGGGCAGTAGAGGCTTTAGCACGTACAG
CGATTGGTGAAATTACACTGGTTGATATGGATGTGCTGGCTGCATCGAATATCAATCGACAATTGCCTGCACTCTCATCT
ACCTTGGGACAAGAAAAAGCCGACATCATGGCAGAGCGTTGTCGCCAGATTAATCCGCACGTTAAAATTAATATCGTGGA
TGATTTTTTATCGGCTGATAATGTTGCAGATATTCTCGCATCACAACCTGATGTCGTGCTTGACTGCATTGATGATGTGA
AAGCAAAACTGGCATTAATGCTGTATTGTCGTTTTAACAAAATTCCGTTGATTGTGTCAGGTGGGGCAGGTGGAAAACTA
GATCCACTCAAGATTCGAGTGGCAGATTTATCCAAGACAGAACAAGATCCAATGCTGGCAAAATTGCGTAGTCAATTGCG
AGCAAAAGGCATTTGTAAAAAACCCAAAGAGAAATTTGGGATAACCTGTGTTTATTCGATTGATAATCCATTTTCAGGTA
CAGAAGTCTGTGCGGCGGCTGGACTACGTTGTGGCGGATATGGTTCTGCTGTTGTCGTCACATCTACCTTTGGCATGATT
GCAGCGGCTGAAGTATTAAAGAAGTTAGATATGAAAAAAACGAAGCCTGAATAA

Upstream 100 bases:

>100_bases
GAGTGACGTTGGTAAAGTCATATGATTTTTAAAAATACTCACGAATTATTTTGAAAAGACAAGGTAGAATACGAGCTGTT
TTTTATAGTGGCAGTTTGAT

Downstream 100 bases:

>100_bases
GCTTCGTTTTAGATAAATTCGATTAATCACAATGGTCGATAGTACGTATAAGTGACATTGTCATCTCTATATACATCATA
GCTATTTTGCTTAAAATCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTTNLQTDEYDRRFAGVAKIYGDDAFNHYEKSHVMVIGIGGVGSWAVEALARTAIGEITLVDMDVLAASNINRQLPALSS
TLGQEKADIMAERCRQINPHVKINIVDDFLSADNVADILASQPDVVLDCIDDVKAKLALMLYCRFNKIPLIVSGGAGGKL
DPLKIRVADLSKTEQDPMLAKLRSQLRAKGICKKPKEKFGITCVYSIDNPFSGTEVCAAAGLRCGGYGSAVVVTSTFGMI
AAAEVLKKLDMKKTKPE

Sequences:

>Translated_257_residues
MTTNLQTDEYDRRFAGVAKIYGDDAFNHYEKSHVMVIGIGGVGSWAVEALARTAIGEITLVDMDVLAASNINRQLPALSS
TLGQEKADIMAERCRQINPHVKINIVDDFLSADNVADILASQPDVVLDCIDDVKAKLALMLYCRFNKIPLIVSGGAGGKL
DPLKIRVADLSKTEQDPMLAKLRSQLRAKGICKKPKEKFGITCVYSIDNPFSGTEVCAAAGLRCGGYGSAVVVTSTFGMI
AAAEVLKKLDMKKTKPE
>Mature_256_residues
TTNLQTDEYDRRFAGVAKIYGDDAFNHYEKSHVMVIGIGGVGSWAVEALARTAIGEITLVDMDVLAASNINRQLPALSST
LGQEKADIMAERCRQINPHVKINIVDDFLSADNVADILASQPDVVLDCIDDVKAKLALMLYCRFNKIPLIVSGGAGGKLD
PLKIRVADLSKTEQDPMLAKLRSQLRAKGICKKPKEKFGITCVYSIDNPFSGTEVCAAAGLRCGGYGSAVVVTSTFGMIA
AAEVLKKLDMKKTKPE

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Homo sapiens, GI23510338, Length=155, Percent_Identity=27.0967741935484, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI23510340, Length=155, Percent_Identity=27.0967741935484, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI1789177, Length=261, Percent_Identity=47.1264367816092, Blast_Score=248, Evalue=2e-67,
Organism=Escherichia coli, GI1787048, Length=147, Percent_Identity=34.0136054421769, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87082356, Length=157, Percent_Identity=29.9363057324841, Blast_Score=72, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321790, Length=188, Percent_Identity=28.1914893617021, Blast_Score=99, Evalue=6e-22,
Organism=Saccharomyces cerevisiae, GI6322825, Length=209, Percent_Identity=31.1004784688995, Blast_Score=90, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320598, Length=153, Percent_Identity=24.8366013071895, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321903, Length=102, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322639, Length=188, Percent_Identity=27.1276595744681, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24582879, Length=218, Percent_Identity=27.5229357798165, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24660640, Length=128, Percent_Identity=30.46875, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 27725; Mature: 27593

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNLQTDEYDRRFAGVAKIYGDDAFNHYEKSHVMVIGIGGVGSWAVEALARTAIGEITL
CCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCEEE
VDMDVLAASNINRQLPALSSTLGQEKADIMAERCRQINPHVKINIVDDFLSADNVADILA
EEHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHH
SQPDVVLDCIDDVKAKLALMLYCRFNKIPLIVSGGAGGKLDPLKIRVADLSKTEQDPMLA
CCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCCHHHH
KLRSQLRAKGICKKPKEKFGITCVYSIDNPFSGTEVCAAAGLRCGGYGSAVVVTSTFGMI
HHHHHHHHCCCCCCCHHHHCEEEEEECCCCCCCHHHHHHHCCCCCCCCCEEEEEHHHHHH
AAAEVLKKLDMKKTKPE
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTNLQTDEYDRRFAGVAKIYGDDAFNHYEKSHVMVIGIGGVGSWAVEALARTAIGEITL
CCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCEEE
VDMDVLAASNINRQLPALSSTLGQEKADIMAERCRQINPHVKINIVDDFLSADNVADILA
EEHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHHHH
SQPDVVLDCIDDVKAKLALMLYCRFNKIPLIVSGGAGGKLDPLKIRVADLSKTEQDPMLA
CCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCCCHHHH
KLRSQLRAKGICKKPKEKFGITCVYSIDNPFSGTEVCAAAGLRCGGYGSAVVVTSTFGMI
HHHHHHHHCCCCCCCHHHHCEEEEEECCCCCCCHHHHHHHCCCCCCCCCEEEEEHHHHHH
AAAEVLKKLDMKKTKPE
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]