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The map label for this gene is sdhC [H]

Identifier: 50085920

GI number: 50085920

Start: 2823884

End: 2824285

Strand: Reverse

Name: sdhC [H]

Synonym: ACIAD2882

Alternate gene names: 50085920

Gene position: 2824285-2823884 (Counterclockwise)

Preceding gene: 50085922

Following gene: 50085919

Centisome position: 78.48

GC content: 40.8

Gene sequence:

>402_bases
ATGCCCGCTGTGAAAAGCAACAGACCTGTCAATTTGTCCATGGGTCAGGTGTTAGCGGTAAATTTGCGCTCACCCGTGGC
TATTGCATCAATCTTACACCGTCTTTCTGGTGTGATCGTATTCCTCTTAATTCCCGTTTTACTATGGATTTTGGATAAAT
CCTTATCTTCACCAGAAGGATTTGAATACGTAAAAACAGTAATCTTCGGAAATATTTTAGTACGTCTTATCGTATGGGTA
TTTGTAGCAGGTTTAATCTTTCACTTTATTGCTGGTGTTAAACACTTGCTCGCTGATCTTGGCTTTGCAGAAGAGCTTCA
AAGTGGGCGCACTGCAGCTACAATTTCATTGATCTTATCTGTGATCGGTATCATCGCAGCCTTTGTATGGATTGTGTTCT
AA

Upstream 100 bases:

>100_bases
TAATTCATTGTCGTTTATTAAGTAGGCATTTGCTTGCCTTCAATGCCAGCTTTCCTTCGAATTAATTCAAACAAACTCCA
GCTGGAGTTTTTACTACAGG

Downstream 100 bases:

>100_bases
TGAAAAGTGCTACAGGATTAACAGGTTCAGGTTCTCGCGATTGGTTTATTCAGCGTATTAGTGCTGTGGTTTTGGCCGTA
TATACAGTTGTCATTTTTGG

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFEYVKTVIFGNILVRLIVWV
FVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILSVIGIIAAFVWIVF

Sequences:

>Translated_133_residues
MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFEYVKTVIFGNILVRLIVWV
FVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILSVIGIIAAFVWIVF
>Mature_132_residues
PAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFEYVKTVIFGNILVRLIVWVF
VAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILSVIGIIAAFVWIVF

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=121, Percent_Identity=43.801652892562, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14463; Mature: 14331

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEG
CCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
FEYVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
VIGIIAAFVWIVF
HHHHHHHHHHHHC
>Mature Secondary Structure 
PAVKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEG
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
FEYVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
VIGIIAAFVWIVF
HHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]