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The map label for this gene is ybgC [C]

Identifier: 50085688

GI number: 50085688

Start: 2572373

End: 2572804

Strand: Direct

Name: ybgC [C]

Synonym: ACIAD2618

Alternate gene names: 50085688

Gene position: 2572373-2572804 (Clockwise)

Preceding gene: 50085687

Following gene: 50085689

Centisome position: 71.48

GC content: 37.27

Gene sequence:

>432_bases
CTGAATCAAAAACGGAACACTCTTATGGCGAATAAATTCGAATTTCAAATTCGTGTATATATTGAAGATACTGATGCCGG
CGGTATTGTTTATCATGCTAACCATATTCGCTATATGGAGCGAACACGTACAGAATGGTTACGTGCATCTGGTATTGATC
ATTACTGGCATCAAAGAGACTATAATTTTGTCGTTCATAAAATTGCACTCAAATATATTCGCCCAATCATGATGGACGAT
ATGATCACTGTTACAGCAAGTGTAGTTTCATGTAAAGCTTCGTCATTTGTATTGCAACAAAATATATATCGTGGTGAAAT
CATGCTAGCTTCTGGCGAAGTCGAATTGGCATGTTTGAACGCTGAATTACGTCCTCGTCGTTTGCCAGATGAAATTCGTG
ATCTTATTCTGAAAGAATTAGAACAGGCTTAA

Upstream 100 bases:

>100_bases
GATAAGCTGATAAACTTCAATGCGGTACATCTTTGGCGTTTGAGCAATTTTCTCTATTTTCCCGCAGATTTTTTGAGCAG
CGCCAACTCAAAACACAATA

Downstream 100 bases:

>100_bases
AAAACACACTTTGGCATTTGTAACTATGGCAACACCGATCCAATCTTCATTGCACATTTCTGATCTTATTTTACAAGCAA
GTCCTGTGGTACAGGCTGTA

Product: thioesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MNQKRNTLMANKFEFQIRVYIEDTDAGGIVYHANHIRYMERTRTEWLRASGIDHYWHQRDYNFVVHKIALKYIRPIMMDD
MITVTASVVSCKASSFVLQQNIYRGEIMLASGEVELACLNAELRPRRLPDEIRDLILKELEQA

Sequences:

>Translated_143_residues
MNQKRNTLMANKFEFQIRVYIEDTDAGGIVYHANHIRYMERTRTEWLRASGIDHYWHQRDYNFVVHKIALKYIRPIMMDD
MITVTASVVSCKASSFVLQQNIYRGEIMLASGEVELACLNAELRPRRLPDEIRDLILKELEQA
>Mature_143_residues
MNQKRNTLMANKFEFQIRVYIEDTDAGGIVYHANHIRYMERTRTEWLRASGIDHYWHQRDYNFVVHKIALKYIRPIMMDD
MITVTASVVSCKASSFVLQQNIYRGEIMLASGEVELACLNAELRPRRLPDEIRDLILKELEQA

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=127, Percent_Identity=37.7952755905512, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 16849; Mature: 16849

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKRNTLMANKFEFQIRVYIEDTDAGGIVYHANHIRYMERTRTEWLRASGIDHYWHQRD
CCCCCCCEEEEEEEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHCCC
YNFVVHKIALKYIRPIMMDDMITVTASVVSCKASSFVLQQNIYRGEIMLASGEVELACLN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEC
AELRPRRLPDEIRDLILKELEQA
CCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQKRNTLMANKFEFQIRVYIEDTDAGGIVYHANHIRYMERTRTEWLRASGIDHYWHQRD
CCCCCCCEEEEEEEEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHCCC
YNFVVHKIALKYIRPIMMDDMITVTASVVSCKASSFVLQQNIYRGEIMLASGEVELACLN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEC
AELRPRRLPDEIRDLILKELEQA
CCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]