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The map label for this gene is rarD [C]

Identifier: 50085642

GI number: 50085642

Start: 2525536

End: 2526468

Strand: Reverse

Name: rarD [C]

Synonym: ACIAD2566

Alternate gene names: 50085642

Gene position: 2526468-2525536 (Counterclockwise)

Preceding gene: 50085643

Following gene: 50085641

Centisome position: 70.21

GC content: 41.16

Gene sequence:

>933_bases
ATGTTTCAGGGCGTGTGTTTATCGGTTTTGGCATCAGTCACCTTTGGGGTACTTTACTTTTATACGCAACTACTAACAGG
CTTTGGCTCCGAACAAACATTTGGCTGGCGTATGATTTCAACCCTGCCTTTTTTAACGCTGTTAATGTGGATGATTGGCG
ATTTACATTACATCAAACAGGTCTTAACTCAAATCAAAAAAAATCCGTGGTTTATTTGGCTTTTAATCGTGTCATCTGTA
CTGGTGTCTTTGCAACTCTGGTTGTTTTTGTGGGCACCCATGAATGGCCGTGGCTTAGAGGTATCATTAGGATATTTTTT
ATTGCCTCTGGTTTTAGTGCTGATAGGCAGTCTGTTTTATAAAGAGAAACTATCTCGATTTCAACAAATCGCAGTGCTCT
TGGCGATATTAGGTGTAGCGCATGAAATTTGGCAGCAGGGCACAATCGCTTGGGAGACCGCACTGGTTGCAGTAGGGTAC
TCGGCTTATTTCTTTTTACGCAAAAAAATGAAAACAGATCATTTAGGTGGGTTTTGGTGGGACATTGTGATTATTCTCCC
AATCGCTTTTTATTTTGTATTCATGCCAACCGATATTTCCCAACCATGGCCGCTTTCTTGCTTGGTCTGGATTCTGGCTG
GTCTTGGTTTTTTAAGTGCGCTGGGGTTGGGAAGCTATATTCTGGCAAGCCGTTTTTTACCCATGGTGCTTTTTGGTCTT
TTGAGCTATTTGGAACCTATTTTACTGGCGTTAGTGTCTCTAATGCTGGGAGAAAAAATCTCGTCTCAAGAGTGGTTAAC
CTATATCCCGATCTGGGTTGCGGTATTGTTATTGGTGATTGAGGGTGCAATTCATTTATACCAACAGAAACAAAAATCCA
TAATGCTTGAGCGAAATCTGGAATGCTATCAGAACCGAATTGATGAAAAATAA

Upstream 100 bases:

>100_bases
AACAAGAAAAACCATGCTTTGCATGGTTTTTCTTTAACTGAGGTCTTAAATTCAGTATGGTACAGGTTGTTTTTTTATTA
TTTGGTCAACTGGGGGCTAG

Downstream 100 bases:

>100_bases
TGGATAAGATGGAAAAATGACCATATTTATCTATTTTAGTCAAATTTTAAACAGAGGATGATTTTTTTAAAAAATATTAG
TAATAAATTCTAAAAAATAT

Product: chloramphenicol-sensitive protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MFQGVCLSVLASVTFGVLYFYTQLLTGFGSEQTFGWRMISTLPFLTLLMWMIGDLHYIKQVLTQIKKNPWFIWLLIVSSV
LVSLQLWLFLWAPMNGRGLEVSLGYFLLPLVLVLIGSLFYKEKLSRFQQIAVLLAILGVAHEIWQQGTIAWETALVAVGY
SAYFFLRKKMKTDHLGGFWWDIVIILPIAFYFVFMPTDISQPWPLSCLVWILAGLGFLSALGLGSYILASRFLPMVLFGL
LSYLEPILLALVSLMLGEKISSQEWLTYIPIWVAVLLLVIEGAIHLYQQKQKSIMLERNLECYQNRIDEK

Sequences:

>Translated_310_residues
MFQGVCLSVLASVTFGVLYFYTQLLTGFGSEQTFGWRMISTLPFLTLLMWMIGDLHYIKQVLTQIKKNPWFIWLLIVSSV
LVSLQLWLFLWAPMNGRGLEVSLGYFLLPLVLVLIGSLFYKEKLSRFQQIAVLLAILGVAHEIWQQGTIAWETALVAVGY
SAYFFLRKKMKTDHLGGFWWDIVIILPIAFYFVFMPTDISQPWPLSCLVWILAGLGFLSALGLGSYILASRFLPMVLFGL
LSYLEPILLALVSLMLGEKISSQEWLTYIPIWVAVLLLVIEGAIHLYQQKQKSIMLERNLECYQNRIDEK
>Mature_310_residues
MFQGVCLSVLASVTFGVLYFYTQLLTGFGSEQTFGWRMISTLPFLTLLMWMIGDLHYIKQVLTQIKKNPWFIWLLIVSSV
LVSLQLWLFLWAPMNGRGLEVSLGYFLLPLVLVLIGSLFYKEKLSRFQQIAVLLAILGVAHEIWQQGTIAWETALVAVGY
SAYFFLRKKMKTDHLGGFWWDIVIILPIAFYFVFMPTDISQPWPLSCLVWILAGLGFLSALGLGSYILASRFLPMVLFGL
LSYLEPILLALVSLMLGEKISSQEWLTYIPIWVAVLLLVIEGAIHLYQQKQKSIMLERNLECYQNRIDEK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=29.3918918918919, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 35524; Mature: 35524

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQGVCLSVLASVTFGVLYFYTQLLTGFGSEQTFGWRMISTLPFLTLLMWMIGDLHYIKQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLTQIKKNPWFIWLLIVSSVLVSLQLWLFLWAPMNGRGLEVSLGYFLLPLVLVLIGSLFY
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
KEKLSRFQQIAVLLAILGVAHEIWQQGTIAWETALVAVGYSAYFFLRKKMKTDHLGGFWW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
DIVIILPIAFYFVFMPTDISQPWPLSCLVWILAGLGFLSALGLGSYILASRFLPMVLFGL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYLEPILLALVSLMLGEKISSQEWLTYIPIWVAVLLLVIEGAIHLYQQKQKSIMLERNL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
ECYQNRIDEK
HHHHHHCCCC
>Mature Secondary Structure
MFQGVCLSVLASVTFGVLYFYTQLLTGFGSEQTFGWRMISTLPFLTLLMWMIGDLHYIKQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLTQIKKNPWFIWLLIVSSVLVSLQLWLFLWAPMNGRGLEVSLGYFLLPLVLVLIGSLFY
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHH
KEKLSRFQQIAVLLAILGVAHEIWQQGTIAWETALVAVGYSAYFFLRKKMKTDHLGGFWW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
DIVIILPIAFYFVFMPTDISQPWPLSCLVWILAGLGFLSALGLGSYILASRFLPMVLFGL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYLEPILLALVSLMLGEKISSQEWLTYIPIWVAVLLLVIEGAIHLYQQKQKSIMLERNL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
ECYQNRIDEK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]