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The map label for this gene is sotB [H]

Identifier: 50085609

GI number: 50085609

Start: 2488300

End: 2489451

Strand: Reverse

Name: sotB [H]

Synonym: ACIAD2531

Alternate gene names: 50085609

Gene position: 2489451-2488300 (Counterclockwise)

Preceding gene: 50085612

Following gene: 50085607

Centisome position: 69.18

GC content: 41.06

Gene sequence:

>1152_bases
ATGTCTTTAAAATTATGGATAGCTTTGATTGTTTTAAGCCTGAGTAGCTTTGCCATTGTCACAACCGAATTAGCGCCGAT
AGGTTTACTTTCCGCCTTGGCACATGACTTGAATCAAAGCGAAGCCATCACTGGACTGATTGTGACGGGATATGGCTGGG
TGGCGGCTATCTCGGCGCTATGCTCGATCGTTTTACTAATTCGGTTTCCACGAAAAATGGTCTTAATGGCCATGCTGCTG
ATTTTGGCAATTTCGAATATCATCGTGGCCTATAGTTCATCCTTTAATATGATTTTTTCTGCGCGTATTGTCGGTGCAAT
TGCGCACGGTAGCTTTTGGGCCTTGATTGGAGCTGTTGCTTATAGTCTGGTTCCGAAACATAAACTGGGTTTGGCTACAT
CAATTATTTTTTCAGGTGTTTCAGTTGCGAGTATTTTGGGTGTACCTCTGGCGAGTTATCTGACTCAACTGAGTAGCTGG
CGGTTGGCGTTTGAATTTCTGGGCCTTTTATCTTTCATTATTTGTATTTTAATTCTACTTTTTGTTCCTAAAATTCCAGA
TCAAGCCCCTTTAGCATCAGGCTTTTTTAAAAAAGTGCTCCAGCATTCGACTTTAAATCGTTTATTTATTCTGACAGCAC
TGATCATTTCTTCACATTTTGCTGCATTTACATTTATTGAACCCTTTCTGAGTCAAATCGCACATCTTGCATCGGGTCAG
ATCACATTACTTCTTCTTGTTTTTGGTTCGGCAGGTTTGGTGGGGAATATCCTTGCTGGAAAATTCATGGATCAACATTT
ACAGACAATCATCTTGGTCAGTTTAGTATTCATTTCGGGGAGCGTGTTTGCCTTTGGATATTTGGGAGATCAGGTTACTT
TTAGCATTGCGGTCACCTTTTTGGCGTTGTGGGGTGTTTCGATTGCAACTATATTTGTAGGATTACAAACTTGGGTTTTA
AAGCAGGCAGGTGATTTGGCAGGTGCAGCCTCGGCAATCTATGTTGCAGTTTTTAATGCCAGTATTGGTCTGGGTGCACT
AATGGGGAGCTTCATGCTGCAATATGCCACGCTTAATCGGGCATTTGAAGTCATTGCAATCTTTCTAATTTTTAGTCTTT
ATCTTCTGCAAAAATTTAACCGAACGCATTAA

Upstream 100 bases:

>100_bases
ATATATTTTCCAAAAATGAAAAACTGATTTCAATTATTATCTATATAAATTTCAATCATGGAAATAGATACTTCGGCTTT
CGCATATTGAGGATACATAA

Downstream 100 bases:

>100_bases
TTAAAAATTGAATCGTATCTCTATTTCTGATGTTATCTAACTATGAGAACGCTATAGAGAAATAGAAGATACGATTGCTT
CAGGTCATGAAAAGCAATTA

Product: MFS superfamily arabinose exporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MSLKLWIALIVLSLSSFAIVTTELAPIGLLSALAHDLNQSEAITGLIVTGYGWVAAISALCSIVLLIRFPRKMVLMAMLL
ILAISNIIVAYSSSFNMIFSARIVGAIAHGSFWALIGAVAYSLVPKHKLGLATSIIFSGVSVASILGVPLASYLTQLSSW
RLAFEFLGLLSFIICILILLFVPKIPDQAPLASGFFKKVLQHSTLNRLFILTALIISSHFAAFTFIEPFLSQIAHLASGQ
ITLLLLVFGSAGLVGNILAGKFMDQHLQTIILVSLVFISGSVFAFGYLGDQVTFSIAVTFLALWGVSIATIFVGLQTWVL
KQAGDLAGAASAIYVAVFNASIGLGALMGSFMLQYATLNRAFEVIAIFLIFSLYLLQKFNRTH

Sequences:

>Translated_383_residues
MSLKLWIALIVLSLSSFAIVTTELAPIGLLSALAHDLNQSEAITGLIVTGYGWVAAISALCSIVLLIRFPRKMVLMAMLL
ILAISNIIVAYSSSFNMIFSARIVGAIAHGSFWALIGAVAYSLVPKHKLGLATSIIFSGVSVASILGVPLASYLTQLSSW
RLAFEFLGLLSFIICILILLFVPKIPDQAPLASGFFKKVLQHSTLNRLFILTALIISSHFAAFTFIEPFLSQIAHLASGQ
ITLLLLVFGSAGLVGNILAGKFMDQHLQTIILVSLVFISGSVFAFGYLGDQVTFSIAVTFLALWGVSIATIFVGLQTWVL
KQAGDLAGAASAIYVAVFNASIGLGALMGSFMLQYATLNRAFEVIAIFLIFSLYLLQKFNRTH
>Mature_382_residues
SLKLWIALIVLSLSSFAIVTTELAPIGLLSALAHDLNQSEAITGLIVTGYGWVAAISALCSIVLLIRFPRKMVLMAMLLI
LAISNIIVAYSSSFNMIFSARIVGAIAHGSFWALIGAVAYSLVPKHKLGLATSIIFSGVSVASILGVPLASYLTQLSSWR
LAFEFLGLLSFIICILILLFVPKIPDQAPLASGFFKKVLQHSTLNRLFILTALIISSHFAAFTFIEPFLSQIAHLASGQI
TLLLLVFGSAGLVGNILAGKFMDQHLQTIILVSLVFISGSVFAFGYLGDQVTFSIAVTFLALWGVSIATIFVGLQTWVLK
QAGDLAGAASAIYVAVFNASIGLGALMGSFMLQYATLNRAFEVIAIFLIFSLYLLQKFNRTH

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=349, Percent_Identity=28.080229226361, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI145693198, Length=349, Percent_Identity=26.0744985673352, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787947, Length=341, Percent_Identity=27.8592375366569, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1786595, Length=361, Percent_Identity=24.3767313019391, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41117; Mature: 40986

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKLWIALIVLSLSSFAIVTTELAPIGLLSALAHDLNQSEAITGLIVTGYGWVAAISAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHH
CSIVLLIRFPRKMVLMAMLLILAISNIIVAYSSSFNMIFSARIVGAIAHGSFWALIGAVA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YSLVPKHKLGLATSIIFSGVSVASILGVPLASYLTQLSSWRLAFEFLGLLSFIICILILL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVPKIPDQAPLASGFFKKVLQHSTLNRLFILTALIISSHFAAFTFIEPFLSQIAHLASGQ
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ITLLLLVFGSAGLVGNILAGKFMDQHLQTIILVSLVFISGSVFAFGYLGDQVTFSIAVTF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHH
LALWGVSIATIFVGLQTWVLKQAGDLAGAASAIYVAVFNASIGLGALMGSFMLQYATLNR
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AFEVIAIFLIFSLYLLQKFNRTH
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLKLWIALIVLSLSSFAIVTTELAPIGLLSALAHDLNQSEAITGLIVTGYGWVAAISAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHH
CSIVLLIRFPRKMVLMAMLLILAISNIIVAYSSSFNMIFSARIVGAIAHGSFWALIGAVA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YSLVPKHKLGLATSIIFSGVSVASILGVPLASYLTQLSSWRLAFEFLGLLSFIICILILL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVPKIPDQAPLASGFFKKVLQHSTLNRLFILTALIISSHFAAFTFIEPFLSQIAHLASGQ
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ITLLLLVFGSAGLVGNILAGKFMDQHLQTIILVSLVFISGSVFAFGYLGDQVTFSIAVTF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCHHHHHHHHHH
LALWGVSIATIFVGLQTWVLKQAGDLAGAASAIYVAVFNASIGLGALMGSFMLQYATLNR
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
AFEVIAIFLIFSLYLLQKFNRTH
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA