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The map label for this gene is ycjC [C]

Identifier: 50085608

GI number: 50085608

Start: 2487606

End: 2488202

Strand: Direct

Name: ycjC [C]

Synonym: ACIAD2530

Alternate gene names: 50085608

Gene position: 2487606-2488202 (Clockwise)

Preceding gene: 50085602

Following gene: 50085610

Centisome position: 69.13

GC content: 44.56

Gene sequence:

>597_bases
ATGAGACAAACCAAGAACAGCGTGAAGCTGGAACAATATATTGGCATTCAAATTAAACGCCATCGTCAGGAACAAGGCCT
CAAACTTTCAGAGGTTGCTCAAATCGCGGGAATCAGTCAGGGCATGCTCAGTAAAATTGAAAATGCACAAGTGTCTACCA
GCCTAGAAACCTTGAGCCGTCTTTGCGACGTACTCGGTATTCCAATGTCAACTTTATTTAGTCAATATGACCAACAGGAA
AGTCATGCCATGCTGGTTAAATCTGGAGATGGTATGGAGGTGGTACGCCGCGGTACTGAAAAAGGCCATACTTATCGTCT
ATTAACGCATTCTAGAGGCCCAAGAAAGAACTTTGAGGCGTATCTGGTAAGTATGGATGACGCCAGTGAAGAATTCCCGA
CCTTCGCTCACCCAGGTACAGAAATGCTATATCTAGTTGAAGGAGAGCTGATTTATCGACATGGACAGGAAGTTTTTCAC
ATGCAGCCAGGAGATTGCCTGACTTTGGAAGGTGAAATTCCTCATGGACCAGAGAAACTAGTGCAGGTGCCTATTCGTCT
CTTGTCTGTAATGAATTATGGAAGCAGCGAAGAGTAA

Upstream 100 bases:

>100_bases
TATTTCACCACAAGATTTTTTTAAATTTATCACATCTATTTTTTGTTTTAAGTAAAATCTTCAATCAATCATGATCAAAA
TAGTGCAGAGTTGAACCATA

Downstream 100 bases:

>100_bases
TTGCTTTTCATGACCTGAAGCAATCGTATCTTCTATTTCTCTATAGCGTTCTCATAGTTAGATAACATCAGAAATAGAGA
TACGATTCAATTTTTAATTA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Transcriptional Regulator Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Protein LacI Family; Cupin Domain Protein; XRE Family-Like Protein; Epoxidase; Cupin 2 Domain-Containing Protein; Helix-Turn-Helix Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MRQTKNSVKLEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLFSQYDQQE
SHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEAYLVSMDDASEEFPTFAHPGTEMLYLVEGELIYRHGQEVFH
MQPGDCLTLEGEIPHGPEKLVQVPIRLLSVMNYGSSEE

Sequences:

>Translated_198_residues
MRQTKNSVKLEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLFSQYDQQE
SHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEAYLVSMDDASEEFPTFAHPGTEMLYLVEGELIYRHGQEVFH
MQPGDCLTLEGEIPHGPEKLVQVPIRLLSVMNYGSSEE
>Mature_198_residues
MRQTKNSVKLEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLFSQYDQQE
SHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEAYLVSMDDASEEFPTFAHPGTEMLYLVEGELIYRHGQEVFH
MQPGDCLTLEGEIPHGPEKLVQVPIRLLSVMNYGSSEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787557, Length=161, Percent_Identity=23.6024844720497, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22308; Mature: 22308

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQTKNSVKLEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSR
CCCCCCHHHHHHHHHHHHEEHHHHHCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
LCDVLGIPMSTLFSQYDQQESHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEA
HHHHHCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCCCCEEEEEECCCCCCCCCEE
YLVSMDDASEEFPTFAHPGTEMLYLVEGELIYRHGQEVFHMQPGDCLTLEGEIPHGPEKL
EEEECCCCCCCCCCCCCCCCCEEEEEECEEEEECCCEEEEECCCCEEEEECCCCCCHHHH
VQVPIRLLSVMNYGSSEE
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRQTKNSVKLEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSR
CCCCCCHHHHHHHHHHHHEEHHHHHCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
LCDVLGIPMSTLFSQYDQQESHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEA
HHHHHCCCHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCCCCEEEEEECCCCCCCCCEE
YLVSMDDASEEFPTFAHPGTEMLYLVEGELIYRHGQEVFHMQPGDCLTLEGEIPHGPEKL
EEEECCCCCCCCCCCCCCCCCEEEEEECEEEEECCCEEEEECCCCEEEEECCCCCCHHHH
VQVPIRLLSVMNYGSSEE
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA