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The map label for this gene is ybhD [H]

Identifier: 50085591

GI number: 50085591

Start: 2467153

End: 2468073

Strand: Direct

Name: ybhD [H]

Synonym: ACIAD2511

Alternate gene names: 50085591

Gene position: 2467153-2468073 (Clockwise)

Preceding gene: 50085588

Following gene: 50085592

Centisome position: 68.56

GC content: 40.93

Gene sequence:

>921_bases
TTGATCAGGATGACACCTATGACGCTCAAGCAACTTAAAGCATTTCTCGTGCTGGCTCGTAATCTGAACTATGCCAATGC
CTCTGCCGAGTTGCATTTGAGTCAGTCTGCGCTGAGTTTGAGTATCAAATCGCTTGAAGAGGAACTCGGTGGCAAGCTGT
TTAAACGTAACACCAGACGAGTTGAACTGACAAATGAAGGCCAATCTCTGATTCCACTGGCGCGCAAGTTGCTGGCAAAT
TGGGAAGATATGGAGAAAGATGTTAAACAGCGCTTTAAGCTCAACAGAGGAACCTTAAGCATTGCATCCATGCCATTTGT
GACCCATGCCATTTTGCCAGAAGTGATTAAAATTTTTTCGAGTGAACATCCGAATTTAAGTTTTTCAATTCATGACATTC
CCAACGAACGTATTATTGAAAATGTGCTGGATGGAATTTTTGAACTCGGGCTCTGTTTTCAACCCGTCTTACACGAACAA
CTGGAATTCAAGCCCCTGTTTGATGAAGACTTTCTCGCGCTTTTGCCCAAGTCTCATCCTTTAGCACAACAAAAAACAGT
TCAATGGCCAGAGCTTTATGCCAATCCCTTTGTAACATTGCAGCATCCGTCTATTGTTCGTTATTTGCTTGAACAAAATG
CACAACAGCACGACCTGATTTTAGATTTGAAAGTTGAATGTCATCAAATCAGTTCTCTTTCCAGTCTGGTCGCACTCGGA
ATTGGCGTCAGTGCAATTCCACGTCACTTTCAGCATTTTGTAGACAAAGAACATAATGTCTTACTCGAAATTGAAAATAG
TGAAGTGCATCAGGCAGTAGGTATTGTCTATAAAAAAGATTTTGAACTTTCTAATATTTCAGTCCAGTTTATGCAAGCGC
TCACACGCTTTCCATATGATTCTATTTTAAAAAACCAGTAG

Upstream 100 bases:

>100_bases
TTAAACATTTAAAAATAGATAAGTGAAAATTTAGCTTTTACAAAAAAACAAGACTTAGATCGAATATATTTTTTATCATT
ATGCTTTAAAATCAAAAACT

Downstream 100 bases:

>100_bases
CCATAGTCATAAGTTTTAATGCTCTTGATTTGATCAGAGCAAGCAGGGTTGCGCGAATCCATTGATGGAAACGTTCTGAT
TGATTAATTTTACTCATCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIRMTPMTLKQLKAFLVLARNLNYANASAELHLSQSALSLSIKSLEEELGGKLFKRNTRRVELTNEGQSLIPLARKLLAN
WEDMEKDVKQRFKLNRGTLSIASMPFVTHAILPEVIKIFSSEHPNLSFSIHDIPNERIIENVLDGIFELGLCFQPVLHEQ
LEFKPLFDEDFLALLPKSHPLAQQKTVQWPELYANPFVTLQHPSIVRYLLEQNAQQHDLILDLKVECHQISSLSSLVALG
IGVSAIPRHFQHFVDKEHNVLLEIENSEVHQAVGIVYKKDFELSNISVQFMQALTRFPYDSILKNQ

Sequences:

>Translated_306_residues
MIRMTPMTLKQLKAFLVLARNLNYANASAELHLSQSALSLSIKSLEEELGGKLFKRNTRRVELTNEGQSLIPLARKLLAN
WEDMEKDVKQRFKLNRGTLSIASMPFVTHAILPEVIKIFSSEHPNLSFSIHDIPNERIIENVLDGIFELGLCFQPVLHEQ
LEFKPLFDEDFLALLPKSHPLAQQKTVQWPELYANPFVTLQHPSIVRYLLEQNAQQHDLILDLKVECHQISSLSSLVALG
IGVSAIPRHFQHFVDKEHNVLLEIENSEVHQAVGIVYKKDFELSNISVQFMQALTRFPYDSILKNQ
>Mature_306_residues
MIRMTPMTLKQLKAFLVLARNLNYANASAELHLSQSALSLSIKSLEEELGGKLFKRNTRRVELTNEGQSLIPLARKLLAN
WEDMEKDVKQRFKLNRGTLSIASMPFVTHAILPEVIKIFSSEHPNLSFSIHDIPNERIIENVLDGIFELGLCFQPVLHEQ
LEFKPLFDEDFLALLPKSHPLAQQKTVQWPELYANPFVTLQHPSIVRYLLEQNAQQHDLILDLKVECHQISSLSSLVALG
IGVSAIPRHFQHFVDKEHNVLLEIENSEVHQAVGIVYKKDFELSNISVQFMQALTRFPYDSILKNQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=29.1095890410959, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788748, Length=240, Percent_Identity=27.9166666666667, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=26.9076305220884, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788887, Length=254, Percent_Identity=27.1653543307087, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI157672245, Length=231, Percent_Identity=26.8398268398268, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1790399, Length=310, Percent_Identity=25.1612903225806, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=26.7489711934156, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788481, Length=242, Percent_Identity=25.2066115702479, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789204, Length=251, Percent_Identity=26.6932270916335, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790208, Length=287, Percent_Identity=27.1777003484321, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787601, Length=244, Percent_Identity=27.4590163934426, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI2367136, Length=251, Percent_Identity=27.8884462151394, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081904, Length=189, Percent_Identity=25.3968253968254, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=26.2295081967213, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787806, Length=189, Percent_Identity=24.3386243386243, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789173, Length=148, Percent_Identity=31.7567567567568, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788706, Length=177, Percent_Identity=32.2033898305085, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082132, Length=267, Percent_Identity=22.8464419475655, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=162, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI48994962, Length=89, Percent_Identity=35.9550561797753, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=156, Percent_Identity=28.8461538461538, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35006; Mature: 35006

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRMTPMTLKQLKAFLVLARNLNYANASAELHLSQSALSLSIKSLEEELGGKLFKRNTRR
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHCCCCE
VELTNEGQSLIPLARKLLANWEDMEKDVKQRFKLNRGTLSIASMPFVTHAILPEVIKIFS
EEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEHHCHHHHHHHHHHHHHHHC
SEHPNLSFSIHDIPNERIIENVLDGIFELGLCFQPVLHEQLEFKPLFDEDFLALLPKSHP
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCC
LAQQKTVQWPELYANPFVTLQHPSIVRYLLEQNAQQHDLILDLKVECHQISSLSSLVALG
CCHHHCCCCHHHHCCCEEEECCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHH
IGVSAIPRHFQHFVDKEHNVLLEIENSEVHQAVGIVYKKDFELSNISVQFMQALTRFPYD
CCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCHH
SILKNQ
HHHCCC
>Mature Secondary Structure
MIRMTPMTLKQLKAFLVLARNLNYANASAELHLSQSALSLSIKSLEEELGGKLFKRNTRR
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCHHHHCCCCE
VELTNEGQSLIPLARKLLANWEDMEKDVKQRFKLNRGTLSIASMPFVTHAILPEVIKIFS
EEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEHHCHHHHHHHHHHHHHHHC
SEHPNLSFSIHDIPNERIIENVLDGIFELGLCFQPVLHEQLEFKPLFDEDFLALLPKSHP
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCC
LAQQKTVQWPELYANPFVTLQHPSIVRYLLEQNAQQHDLILDLKVECHQISSLSSLVALG
CCHHHCCCCHHHHCCCEEEECCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHH
IGVSAIPRHFQHFVDKEHNVLLEIENSEVHQAVGIVYKKDFELSNISVQFMQALTRFPYD
CCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCHH
SILKNQ
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]