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The map label for this gene is ydaL [H]

Identifier: 50085547

GI number: 50085547

Start: 2426144

End: 2426806

Strand: Direct

Name: ydaL [H]

Synonym: ACIAD2465

Alternate gene names: 50085547

Gene position: 2426144-2426806 (Clockwise)

Preceding gene: 50085545

Following gene: 50085551

Centisome position: 67.42

GC content: 41.78

Gene sequence:

>663_bases
TTGCTAAAACAGTTCAAAAAACAAATCTCGAACGGTCAGGAAAAGTCTGCCAACAAACAGACTGCCAATAAACAACCCAT
TTACAATGGCCCTCAAGCCGAACCAGAAGATGACAGCCAACTATTGAGTAAAGCACTACAAGGTGTAAAACCAATTGATC
ATGGCAATATCGCCGATATTAGACCAAGCCGTAATAAAAAAGTCGATGCTCAGATACTGGCAAAGCGTGCGGCGGCAGAA
GGCAGTGCCGAAACTGAAATGACCGAAATTTCAGATACGCAAGCGATTTTAAATCCTGTTGCCAGTCAGGCAAGCTTAAG
CTACCGCATCGCGACACTACAACACAAAGTGTTTGAAGACTTAAAAGCAGGTAAATTACGCTGGTTTGAAGCTGTCGATT
TACATGGCTGTACGGTAGAACAAGCACGCTCGGCAGTACTACAAATCATTCAAATGGCAAAAACTGAGAATCAAAATGTG
ATTAAAATTGTGCATGGCAAAGGCCCAGAAGCCATTTTAAAAACTTACGTGAATGGTTGGTTACGTCAGCATCGTGATGT
GCTGGCATTTGTGAGTGCACCTGAAAATCAGGGTGGTACTGGTGCAGTTTTAGTGTTACTCAAACGTGCTGAAAAAAATC
CAAAATATGAACAAAAAAAATGA

Upstream 100 bases:

>100_bases
TTTAGTATTTCATAATATAATGTTTACATACAGCCATAAGCTACACCATGATTCTATTATGAGCAAACACGACACCTCCC
TCTCCAAAGCCCAACACGAT

Downstream 100 bases:

>100_bases
TTCACTTGAATCATTTTTTGTTATCAAATATTTGAAGCAGTTCAGCAACCACCGAAACCGCAATAATTGCAGGTTGTTTG
GAGTGAATACCCTCAATTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLKQFKKQISNGQEKSANKQTANKQPIYNGPQAEPEDDSQLLSKALQGVKPIDHGNIADIRPSRNKKVDAQILAKRAAAE
GSAETEMTEISDTQAILNPVASQASLSYRIATLQHKVFEDLKAGKLRWFEAVDLHGCTVEQARSAVLQIIQMAKTENQNV
IKIVHGKGPEAILKTYVNGWLRQHRDVLAFVSAPENQGGTGAVLVLLKRAEKNPKYEQKK

Sequences:

>Translated_220_residues
MLKQFKKQISNGQEKSANKQTANKQPIYNGPQAEPEDDSQLLSKALQGVKPIDHGNIADIRPSRNKKVDAQILAKRAAAE
GSAETEMTEISDTQAILNPVASQASLSYRIATLQHKVFEDLKAGKLRWFEAVDLHGCTVEQARSAVLQIIQMAKTENQNV
IKIVHGKGPEAILKTYVNGWLRQHRDVLAFVSAPENQGGTGAVLVLLKRAEKNPKYEQKK
>Mature_220_residues
MLKQFKKQISNGQEKSANKQTANKQPIYNGPQAEPEDDSQLLSKALQGVKPIDHGNIADIRPSRNKKVDAQILAKRAAAE
GSAETEMTEISDTQAILNPVASQASLSYRIATLQHKVFEDLKAGKLRWFEAVDLHGCTVEQARSAVLQIIQMAKTENQNV
IKIVHGKGPEAILKTYVNGWLRQHRDVLAFVSAPENQGGTGAVLVLLKRAEKNPKYEQKK

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=179, Percent_Identity=27.9329608938547, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788671, Length=179, Percent_Identity=29.608938547486, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 24301; Mature: 24301

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQFKKQISNGQEKSANKQTANKQPIYNGPQAEPEDDSQLLSKALQGVKPIDHGNIADI
CHHHHHHHHCCCHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
RPSRNKKVDAQILAKRAAAEGSAETEMTEISDTQAILNPVASQASLSYRIATLQHKVFED
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKAGKLRWFEAVDLHGCTVEQARSAVLQIIQMAKTENQNVIKIVHGKGPEAILKTYVNGW
HHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
LRQHRDVLAFVSAPENQGGTGAVLVLLKRAEKNPKYEQKK
HHHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLKQFKKQISNGQEKSANKQTANKQPIYNGPQAEPEDDSQLLSKALQGVKPIDHGNIADI
CHHHHHHHHCCCHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
RPSRNKKVDAQILAKRAAAEGSAETEMTEISDTQAILNPVASQASLSYRIATLQHKVFED
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKAGKLRWFEAVDLHGCTVEQARSAVLQIIQMAKTENQNVIKIVHGKGPEAILKTYVNGW
HHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
LRQHRDVLAFVSAPENQGGTGAVLVLLKRAEKNPKYEQKK
HHHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]