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The map label for this gene is himD [H]

Identifier: 50085437

GI number: 50085437

Start: 2308539

End: 2308844

Strand: Reverse

Name: himD [H]

Synonym: ACIAD2346

Alternate gene names: 50085437

Gene position: 2308844-2308539 (Counterclockwise)

Preceding gene: 50085438

Following gene: 50085436

Centisome position: 64.16

GC content: 38.56

Gene sequence:

>306_bases
ATGACTACTGAAGCACTTAATAAGTCTGACTTAATAGAACGTATTGCTTTAAAAAACCCGCATTTGGCTGAGCCTTTGGT
TGAAGAAGCAGTCAAGATCATGATTGATCAAATGATTGATGCTTTATCAAATGACAATCGTATCGAAATTCGTGGTTTTG
GTAGTTTTGCACTACATCACAGAGATCCACGTGTGGGTCGTAATCCTAAAACAGGTAAGTCAGTTGAAGTTGCTGCAAAA
GCAGTACCTCATTTCAAGCCTGGTAAAGCATTACGTGATGCGGTTAATGAAGCGATTAACGATTAA

Upstream 100 bases:

>100_bases
TAAACGGTAGCGTAGTATTAGTGTACTGCGCTACCGTTTTGTATTTAAACAGGTTATTATAAAACTTAATTCGAAGTAGC
AATAATTAAAGAGGTCATCG

Downstream 100 bases:

>100_bases
ATTATAAAATTAATAAAATGAGGTCACTATGCGTTATTTATTAGTCGCATTACTCGTTATTTTGTTTGGATACTCTTTAG
CTTTGGTACTTCAAAATCCG

Product: integration host factor (IHF),beta subunit, site specific recombination

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MTTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEIRGFGSFALHHRDPRVGRNPKTGKSVEVAAK
AVPHFKPGKALRDAVNEAIND

Sequences:

>Translated_101_residues
MTTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEIRGFGSFALHHRDPRVGRNPKTGKSVEVAAK
AVPHFKPGKALRDAVNEAIND
>Mature_100_residues
TTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEIRGFGSFALHHRDPRVGRNPKTGKSVEVAAKA
VPHFKPGKALRDAVNEAIND

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=58.2417582417582, Blast_Score=116, Evalue=3e-28,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=40.6593406593407, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=40, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1788005, Length=94, Percent_Identity=32.9787234042553, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11163; Mature: 11032

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEIRGFGSFALHH
CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEC
RDPRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNEAIND
CCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TTEALNKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEIRGFGSFALHH
CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEC
RDPRVGRNPKTGKSVEVAAKAVPHFKPGKALRDAVNEAIND
CCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA