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The map label for this gene is ydcN [H]

Identifier: 50085433

GI number: 50085433

Start: 2306456

End: 2307004

Strand: Reverse

Name: ydcN [H]

Synonym: ACIAD2342

Alternate gene names: 50085433

Gene position: 2307004-2306456 (Counterclockwise)

Preceding gene: 50085436

Following gene: 50085432

Centisome position: 64.11

GC content: 40.98

Gene sequence:

>549_bases
ATGTCGCTACCAATTGAAATAGTCGCAAAGGGTTTACACAGAGAAAGACAAAAAGCGGGTTTGTCTCTTGCAGAGCTTGC
GCGTAGGGCAGGGATTGCAAAATCAACCTTATCACAACTTGAAGCAGCACAGGGTAATCCGAGTCTGGAAACCTTATGGT
CTTTGTGTGTGGCTCTAGAAATCCCCTTTGCGAAATTGATGGAAAGTAATATTCCACAGACACAAGTCATTCGTTTTGGT
GAAGGACCTTCAGTTGCATCGGAAATTGCACATTATCAGGCAATTTTATTGGCAAATTGTCCAACAGGAGCAAGACGAGA
TGTATATATATTGAATACTCAACCAGGTGAGCCACGTTTGAGCCATCCACATCCTATTGGAAGTATTGAACATATTATTA
TTATGAAAGGTTGTGCAAAAGTTGGATTAACTGCTGAACCTGTTGTTCTAAATGAAGGTGATTATATCTGTTATCCTGCT
GACCAAGAGCATATCTTTGAAGCGCTCGATGAGGATACACGTGCGATTTTGATCTCTGAGCAAAGATAA

Upstream 100 bases:

>100_bases
TTGAGTTGGCATGAAAGTTTTATATATCAAACGAACGTACGTTATAATAAGCTATATCATGTTTTTAGTCAAAACGAACG
ATCGTTCATTATGGTGTTTT

Downstream 100 bases:

>100_bases
GATAAATTCATTTCATAATTTGGGCTTTTTTTCATAAAAGCGATATTCCTGCTTTGTCGAATACGTGAATCCATCTATAA
TTAGCCGAATTTTAAGCTGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSLPIEIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAKLMESNIPQTQVIRFG
EGPSVASEIAHYQAILLANCPTGARRDVYILNTQPGEPRLSHPHPIGSIEHIIIMKGCAKVGLTAEPVVLNEGDYICYPA
DQEHIFEALDEDTRAILISEQR

Sequences:

>Translated_182_residues
MSLPIEIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAKLMESNIPQTQVIRFG
EGPSVASEIAHYQAILLANCPTGARRDVYILNTQPGEPRLSHPHPIGSIEHIIIMKGCAKVGLTAEPVVLNEGDYICYPA
DQEHIFEALDEDTRAILISEQR
>Mature_181_residues
SLPIEIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAKLMESNIPQTQVIRFGE
GPSVASEIAHYQAILLANCPTGARRDVYILNTQPGEPRLSHPHPIGSIEHIIIMKGCAKVGLTAEPVVLNEGDYICYPAD
QEHIFEALDEDTRAILISEQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=170, Percent_Identity=27.6470588235294, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 19870; Mature: 19739

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPIEIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALE
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHC
IPFAKLMESNIPQTQVIRFGEGPSVASEIAHYQAILLANCPTGARRDVYILNTQPGEPRL
CCHHHHHHCCCCHHHEEEECCCCCHHHHHHHHHHHEEECCCCCCCCCEEEEECCCCCCCC
SHPHPIGSIEHIIIMKGCAKVGLTAEPVVLNEGDYICYPADQEHIFEALDEDTRAILISE
CCCCCCCCCCEEEEEECHHHCCCCCCCEEECCCCEEEECCCHHHHHHHHCCCCEEEEEEC
QR
CC
>Mature Secondary Structure 
SLPIEIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALE
CCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHC
IPFAKLMESNIPQTQVIRFGEGPSVASEIAHYQAILLANCPTGARRDVYILNTQPGEPRL
CCHHHHHHCCCCHHHEEEECCCCCHHHHHHHHHHHEEECCCCCCCCCEEEEECCCCCCCC
SHPHPIGSIEHIIIMKGCAKVGLTAEPVVLNEGDYICYPADQEHIFEALDEDTRAILISE
CCCCCCCCCCEEEEEECHHHCCCCCCCEEECCCCEEEECCCHHHHHHHHCCCCEEEEEEC
QR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]