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The map label for this gene is cph2 [H]

Identifier: 50085216

GI number: 50085216

Start: 2081967

End: 2083199

Strand: Direct

Name: cph2 [H]

Synonym: ACIAD2096

Alternate gene names: 50085216

Gene position: 2081967-2083199 (Clockwise)

Preceding gene: 50085214

Following gene: 50085217

Centisome position: 57.85

GC content: 36.98

Gene sequence:

>1233_bases
ATGAAGTTACAAGGCTCAAATATATTAAATCAAGAGCAAATCGACTTATTGATATCTCGTGGGCTTAATTTTGTATGGTT
TCCCCAACAACTTGAGACTCTTTATCGCGAACAATATAAACAAGCAGCTGCATATGAATTCCGATTTCGGGCGCCTATTA
TTCTTATATTATATGGTTTATTAAGCTTTGGTATTTATCAGATCCTTCCTCATAATCAAGTAGAAACTTGGTTGATTTAT
TATGCTTGGGTCGGGATTATCATTACCTTTGCTTGGTTATTATCTTTTATCAAGATATTTAATAAATGGTTTGATGTTTA
CGTCGGTTTAGGCTCGACTGCTGCGGTTGCAATTACATTTACACTCATCAACGTCATAGAAGGAGGCCAAAATAATGCTC
TTTTGCATGCATCAATGATGTATGCCGTTATTATTATCTATGGTTTTGTTGGATTACGATTCTATAATGCTCTATTCGCG
GGATGGATCGGTGGACTGGTAGGCATTATTTTTAGTCTTAATTTCAACAATTCGATTGACTGGACTTACCTAAATCGAAC
CTACACTTTCAGTAGTTTTTTGGGTATGGCTCTTGCCTATTTTACAGACCGTCAGCACAGAGAAAATTTTTTAAGAGATT
GTATTATCGAACTTAATCGCCTTGAACTTGTGAAACAGGCAGAACTTCTGGAAACACTCTCTCAACAGGACTCTCTGACT
GGTTTAGCAAATCGACGTTATCTTGATGAAGTTTTAGAAAAAGAATGGCGCCGTGCGGTCAGGCATAGTACCCCCATTAC
CATCATGATGATCGATATCGATTACTTTAAATCTTATAATGATTCATTAGGACATATCAAAGGCGATGAGTGTTTACGCG
AAATCGCGCTTGCCTTAAGTACGCTCACTTCAAGAAGTGGCGATCTTGCTGCCCGATATGGGGGTGAAGAATTTTTATTA
TTATTTCCAATGACCAATGAATCTGATGCACTCATTCAAGTTAAACGACTGATGAATGTGGTCAAAAATGTCGGTATTTT
ACATCCTTCAAGTGATATCTCTTCCGAAGTAACCTTAAGTGTAGGTGTTGCCACTATTATTCCAACTTTAGCAGATACGA
TTTCTGCATTTATTACTCGCGCAGATCATGCTTTATACATGGCAAAGAGTAATGGTCGAAATCAATACCAAATTGCAAAT
CTAAATGTGACCTTAAGAATGAGTCAAGTTTAA

Upstream 100 bases:

>100_bases
ATATTACTTTAATTCCATAGAAAATCGCCGTATATTGTTTTAAAGCACATTTATATCTCATAAATATTTTCGGAATGTCC
AAGGATAGCGAGATCTAACG

Downstream 100 bases:

>100_bases
AAAATAATGATAATTATTTTCATTTAAACTATTATACTCGATCTATTAATAACATTTTTGCTCATTATGAAAAAATTCTG
TTTACTTGCTGCTTTCATGT

Product: two-component response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MKLQGSNILNQEQIDLLISRGLNFVWFPQQLETLYREQYKQAAAYEFRFRAPIILILYGLLSFGIYQILPHNQVETWLIY
YAWVGIIITFAWLLSFIKIFNKWFDVYVGLGSTAAVAITFTLINVIEGGQNNALLHASMMYAVIIIYGFVGLRFYNALFA
GWIGGLVGIIFSLNFNNSIDWTYLNRTYTFSSFLGMALAYFTDRQHRENFLRDCIIELNRLELVKQAELLETLSQQDSLT
GLANRRYLDEVLEKEWRRAVRHSTPITIMMIDIDYFKSYNDSLGHIKGDECLREIALALSTLTSRSGDLAARYGGEEFLL
LFPMTNESDALIQVKRLMNVVKNVGILHPSSDISSEVTLSVGVATIIPTLADTISAFITRADHALYMAKSNGRNQYQIAN
LNVTLRMSQV

Sequences:

>Translated_410_residues
MKLQGSNILNQEQIDLLISRGLNFVWFPQQLETLYREQYKQAAAYEFRFRAPIILILYGLLSFGIYQILPHNQVETWLIY
YAWVGIIITFAWLLSFIKIFNKWFDVYVGLGSTAAVAITFTLINVIEGGQNNALLHASMMYAVIIIYGFVGLRFYNALFA
GWIGGLVGIIFSLNFNNSIDWTYLNRTYTFSSFLGMALAYFTDRQHRENFLRDCIIELNRLELVKQAELLETLSQQDSLT
GLANRRYLDEVLEKEWRRAVRHSTPITIMMIDIDYFKSYNDSLGHIKGDECLREIALALSTLTSRSGDLAARYGGEEFLL
LFPMTNESDALIQVKRLMNVVKNVGILHPSSDISSEVTLSVGVATIIPTLADTISAFITRADHALYMAKSNGRNQYQIAN
LNVTLRMSQV
>Mature_410_residues
MKLQGSNILNQEQIDLLISRGLNFVWFPQQLETLYREQYKQAAAYEFRFRAPIILILYGLLSFGIYQILPHNQVETWLIY
YAWVGIIITFAWLLSFIKIFNKWFDVYVGLGSTAAVAITFTLINVIEGGQNNALLHASMMYAVIIIYGFVGLRFYNALFA
GWIGGLVGIIFSLNFNNSIDWTYLNRTYTFSSFLGMALAYFTDRQHRENFLRDCIIELNRLELVKQAELLETLSQQDSLT
GLANRRYLDEVLEKEWRRAVRHSTPITIMMIDIDYFKSYNDSLGHIKGDECLREIALALSTLTSRSGDLAARYGGEEFLL
LFPMTNESDALIQVKRLMNVVKNVGILHPSSDISSEVTLSVGVATIIPTLADTISAFITRADHALYMAKSNGRNQYQIAN
LNVTLRMSQV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=33.1460674157303, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=33.1428571428571, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=37.2781065088757, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=37.5690607734807, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=31.3186813186813, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=32.7272727272727, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=34.1463414634146, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788085, Length=176, Percent_Identity=35.7954545454545, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=31.055900621118, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=33.9181286549708, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=31.0975609756098, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 46754; Mature: 46754

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQGSNILNQEQIDLLISRGLNFVWFPQQLETLYREQYKQAAAYEFRFRAPIILILYGL
CCCCCCCCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LSFGIYQILPHNQVETWLIYYAWVGIIITFAWLLSFIKIFNKWFDVYVGLGSTAAVAITF
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
TLINVIEGGQNNALLHASMMYAVIIIYGFVGLRFYNALFAGWIGGLVGIIFSLNFNNSID
HHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
WTYLNRTYTFSSFLGMALAYFTDRQHRENFLRDCIIELNRLELVKQAELLETLSQQDSLT
EEEECCEEEHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLANRRYLDEVLEKEWRRAVRHSTPITIMMIDIDYFKSYNDSLGHIKGDECLREIALALS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHH
TLTSRSGDLAARYGGEEFLLLFPMTNESDALIQVKRLMNVVKNVGILHPSSDISSEVTLS
HHHCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEH
VGVATIIPTLADTISAFITRADHALYMAKSNGRNQYQIANLNVTLRMSQV
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEEEEECCC
>Mature Secondary Structure
MKLQGSNILNQEQIDLLISRGLNFVWFPQQLETLYREQYKQAAAYEFRFRAPIILILYGL
CCCCCCCCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LSFGIYQILPHNQVETWLIYYAWVGIIITFAWLLSFIKIFNKWFDVYVGLGSTAAVAITF
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
TLINVIEGGQNNALLHASMMYAVIIIYGFVGLRFYNALFAGWIGGLVGIIFSLNFNNSID
HHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
WTYLNRTYTFSSFLGMALAYFTDRQHRENFLRDCIIELNRLELVKQAELLETLSQQDSLT
EEEECCEEEHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLANRRYLDEVLEKEWRRAVRHSTPITIMMIDIDYFKSYNDSLGHIKGDECLREIALALS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHH
TLTSRSGDLAARYGGEEFLLLFPMTNESDALIQVKRLMNVVKNVGILHPSSDISSEVTLS
HHHCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEH
VGVATIIPTLADTISAFITRADHALYMAKSNGRNQYQIANLNVTLRMSQV
HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]