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The map label for this gene is yahB [C]

Identifier: 50085116

GI number: 50085116

Start: 1968436

End: 1969287

Strand: Direct

Name: yahB [C]

Synonym: ACIAD1979

Alternate gene names: 50085116

Gene position: 1968436-1969287 (Clockwise)

Preceding gene: 50085114

Following gene: 50085117

Centisome position: 54.7

GC content: 40.49

Gene sequence:

>852_bases
ATGGAAACAGGCTCTTTCTCCGCTGCAGCACGAAAGCTGGGAAAAGTCCCTTCGGCTGTTAGCATGTCTATTGCCAATCT
TGAAATTGATCTCGATCTCAAGCTTTTTGAACGTAAAGGCCGTGAACCAGTACCCACTGCTCAAGCCACGGTACTCCACG
AAAAAACAGCCCAATTGCTTATCGAGATGAATCAATGGAAACAACAAGCCTACGCCTTGAGTACGGGGCTAGAATCTTCT
TTAAATATTGTTATTGTTTCGGAGTTATTACATACAAACTGGGTAGATTATATTCGTTTGGTGGAGCAAAAATTTCCTAG
CCTACACATCAATATTATGTCGGCCCCTCAAGAAGATGCTTTAAGCATGTTGTTAGACCAAAGTGCACAACTCGCATGGA
TGTTTGAGCGTGAGCAACTCGATCATCGCGAGCAGTTTGTTGAAATTAAGAAGGAAGCTTTACTTACCGTTGCTGCAAAT
GACCATTTTTTAGCACAGCTTGATCAGGTCAATTTCAAGCATTTGCTTCAAGCCAGACAAATTGTTGTTGCGAGTCGTGA
CAACAATATAAAACCAGAGTTACTATTTTCCAGACATTATTGGCGTACCGATAACCATCATTCAGCATGCATGATGATCT
TGGGTGGTCTAGGTTGGGGCGTGTTACCCGCTGAAATGTTTAATCAAAATCCAAAACTATCTAAACAATTGAAAGTTTTA
AATGTATTGGATTTCACTCCAAAACTTGAATACTTTATTGATTTGGTATGGAGTCGTGAGAGTAATCTTGGAGCAGCGGC
ACTATTTCTTATCAATCACTTACAGATGCAGAGAAAACAACCAAACACTTAA

Upstream 100 bases:

>100_bases
GCATTTTATTTTTATAATACTGATAAATCTAATTAGGTTCTTTCAAAATTTTTGATAGATGAATATTAATCAAGAACAAC
TCATAATTTTTCAGACTGTT

Downstream 100 bases:

>100_bases
ATTACGCTTGGGTTCCAGCTAGATTATGCTATAACTAATGACATCCTTATTTTATATAAAGACGTTAAAAAAATGACTCA
ATCTGCGCTTGATCAACTAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; LysR Family Regulatory Helix-Turn-Helix Protein; LysR-Family Transcriptional Regulator; Transcriptional Regulator Lysr Family; Transcriptional Regulator LysR Family Protein; LysR Family Regulatory Protein; Transcriptional Regulators LysR Family; Regulatory Protein LysR; Regulatory Protein; Pyoverdine Synthetase; Transcription Regulator LysR Family; LysR Family Transcription Regulator Protein; HTH-Type Transcriptional Regulator AlsR; LysR-Type Regulator; HTH-Type Transcriptional Regulator LysR-Family; Transcriptional Regulator Protein; RuBisCO Transcriptional Regulator; Transcriptional Regulator LysR; Transcriptional Regulator Protein LysR Family; HTH-Type Transcription Regulator LysR Family

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
METGSFSAAARKLGKVPSAVSMSIANLEIDLDLKLFERKGREPVPTAQATVLHEKTAQLLIEMNQWKQQAYALSTGLESS
LNIVIVSELLHTNWVDYIRLVEQKFPSLHINIMSAPQEDALSMLLDQSAQLAWMFEREQLDHREQFVEIKKEALLTVAAN
DHFLAQLDQVNFKHLLQARQIVVASRDNNIKPELLFSRHYWRTDNHHSACMMILGGLGWGVLPAEMFNQNPKLSKQLKVL
NVLDFTPKLEYFIDLVWSRESNLGAAALFLINHLQMQRKQPNT

Sequences:

>Translated_283_residues
METGSFSAAARKLGKVPSAVSMSIANLEIDLDLKLFERKGREPVPTAQATVLHEKTAQLLIEMNQWKQQAYALSTGLESS
LNIVIVSELLHTNWVDYIRLVEQKFPSLHINIMSAPQEDALSMLLDQSAQLAWMFEREQLDHREQFVEIKKEALLTVAAN
DHFLAQLDQVNFKHLLQARQIVVASRDNNIKPELLFSRHYWRTDNHHSACMMILGGLGWGVLPAEMFNQNPKLSKQLKVL
NVLDFTPKLEYFIDLVWSRESNLGAAALFLINHLQMQRKQPNT
>Mature_283_residues
METGSFSAAARKLGKVPSAVSMSIANLEIDLDLKLFERKGREPVPTAQATVLHEKTAQLLIEMNQWKQQAYALSTGLESS
LNIVIVSELLHTNWVDYIRLVEQKFPSLHINIMSAPQEDALSMLLDQSAQLAWMFEREQLDHREQFVEIKKEALLTVAAN
DHFLAQLDQVNFKHLLQARQIVVASRDNNIKPELLFSRHYWRTDNHHSACMMILGGLGWGVLPAEMFNQNPKLSKQLKVL
NVLDFTPKLEYFIDLVWSRESNLGAAALFLINHLQMQRKQPNT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32325; Mature: 32325

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGSFSAAARKLGKVPSAVSMSIANLEIDLDLKLFERKGREPVPTAQATVLHEKTAQLL
CCCCCHHHHHHHHCCCCCHHEEEEEEEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHH
IEMNQWKQQAYALSTGLESSLNIVIVSELLHTNWVDYIRLVEQKFPSLHINIMSAPQEDA
HHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCHHHHHHHHHHHCCCEEEEEECCCHHHH
LSMLLDQSAQLAWMFEREQLDHREQFVEIKKEALLTVAANDHFLAQLDQVNFKHLLQARQ
HHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHCCHHHHHHHHH
IVVASRDNNIKPELLFSRHYWRTDNHHSACMMILGGLGWGVLPAEMFNQNPKLSKQLKVL
EEEECCCCCCCHHEEEEECCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHH
NVLDFTPKLEYFIDLVWSRESNLGAAALFLINHLQMQRKQPNT
HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
METGSFSAAARKLGKVPSAVSMSIANLEIDLDLKLFERKGREPVPTAQATVLHEKTAQLL
CCCCCHHHHHHHHCCCCCHHEEEEEEEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHH
IEMNQWKQQAYALSTGLESSLNIVIVSELLHTNWVDYIRLVEQKFPSLHINIMSAPQEDA
HHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCHHHHHHHHHHHCCCEEEEEECCCHHHH
LSMLLDQSAQLAWMFEREQLDHREQFVEIKKEALLTVAANDHFLAQLDQVNFKHLLQARQ
HHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHCCHHHHHHHHH
IVVASRDNNIKPELLFSRHYWRTDNHHSACMMILGGLGWGVLPAEMFNQNPKLSKQLKVL
EEEECCCCCCCHHEEEEECCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHH
NVLDFTPKLEYFIDLVWSRESNLGAAALFLINHLQMQRKQPNT
HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA