Click here to switch to the map view.

The map label for this gene is yfdC [H]

Identifier: 50084947

GI number: 50084947

Start: 1807210

End: 1808064

Strand: Reverse

Name: yfdC [H]

Synonym: ACIAD1800

Alternate gene names: 50084947

Gene position: 1808064-1807210 (Counterclockwise)

Preceding gene: 50084950

Following gene: 50084941

Centisome position: 50.24

GC content: 39.3

Gene sequence:

>855_bases
ATGAGTAAAACAGAGCGAGATAAAATTAAGGTCGAAATGGAGATAGATCCGCATTTAAGCTGGCAGGAAAAACTTGCTGT
TGAAGAACAGGAAAAACTTTCGCCACGTTTGGTCTATGAGATTATCCGCCGTGATGGTGTAGAAGAATTGAGTCGCCCAA
CCTCAACCCTTATATTTTCAGGGATCACGGCTGGTCTTGTGATGAGTTTTAGCTTTGTATTTAAAGCCGTGATTGCATCT
TACCTGCCTATAGATGCAGTCTGGACAGATCTTATTACCAACATTGGTTATACCATTGGATTCCTCATCGCTATTTTGGG
GCATTTACAGCTTTTTACCGAAAATACCATCACCACAGTGATTCCCCTGTTTAAACCTTTCAGTTTAGATAAACTCAAAG
CTGTGGCTAGACTCTGGAGCATTGTAATCCTGACTAATATTTTTGGTACTGCATTATCTAGTCTCTTCTTTCTTACAACT
GATTTGTTTAGTCCTGAAGTCGATCATGCTTTAGATGAAATAGCTCATCATGTTGCCTCTTTTACGGCTTGGGAAAATTT
CTTAAAAGGCGTGCTTTCTGGGCTGTTGATCGCTGCTTTAGTTTGGATGCTGCCTTCAGTCAACAATAAAATTTTGTTGA
TCTTTATGATCACCTATTTGATTGGTTTAGGTGATTTTACGCATGTTGTCGTGGGCTCTGTAGAAGTTGCTTATCTGGTT
TGGCAAGGACAAACCTCTCTAAGCGAGTATTTTTTCCAATTTTTAGTACCAACAACACTAGGCAATATTATAGGCGGTAC
AGGCATATTTACTTTACTTATATATGGGCAGGTCAATCAGGAGCTTGAAGAATAA

Upstream 100 bases:

>100_bases
TTACATTTTGCATCTAAAAGTAGCTATAAAACTATTTGCTGACTCTGCATTATTTTATTTGATAAAACAAATAACGATTA
AAAAATCAAGGAAGAAGACG

Downstream 100 bases:

>100_bases
CCATGCCAGATTATCCCAAAGGATCATTTAACACCAATTACAAAAGTATGTTATATGATTTTTCAGATTCTTGATGAAAT
AAAGTCCAATCATCAATTGG

Product: formate/nitrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSKTERDKIKVEMEIDPHLSWQEKLAVEEQEKLSPRLVYEIIRRDGVEELSRPTSTLIFSGITAGLVMSFSFVFKAVIAS
YLPIDAVWTDLITNIGYTIGFLIAILGHLQLFTENTITTVIPLFKPFSLDKLKAVARLWSIVILTNIFGTALSSLFFLTT
DLFSPEVDHALDEIAHHVASFTAWENFLKGVLSGLLIAALVWMLPSVNNKILLIFMITYLIGLGDFTHVVVGSVEVAYLV
WQGQTSLSEYFFQFLVPTTLGNIIGGTGIFTLLIYGQVNQELEE

Sequences:

>Translated_284_residues
MSKTERDKIKVEMEIDPHLSWQEKLAVEEQEKLSPRLVYEIIRRDGVEELSRPTSTLIFSGITAGLVMSFSFVFKAVIAS
YLPIDAVWTDLITNIGYTIGFLIAILGHLQLFTENTITTVIPLFKPFSLDKLKAVARLWSIVILTNIFGTALSSLFFLTT
DLFSPEVDHALDEIAHHVASFTAWENFLKGVLSGLLIAALVWMLPSVNNKILLIFMITYLIGLGDFTHVVVGSVEVAYLV
WQGQTSLSEYFFQFLVPTTLGNIIGGTGIFTLLIYGQVNQELEE
>Mature_283_residues
SKTERDKIKVEMEIDPHLSWQEKLAVEEQEKLSPRLVYEIIRRDGVEELSRPTSTLIFSGITAGLVMSFSFVFKAVIASY
LPIDAVWTDLITNIGYTIGFLIAILGHLQLFTENTITTVIPLFKPFSLDKLKAVARLWSIVILTNIFGTALSSLFFLTTD
LFSPEVDHALDEIAHHVASFTAWENFLKGVLSGLLIAALVWMLPSVNNKILLIFMITYLIGLGDFTHVVVGSVEVAYLVW
QGQTSLSEYFFQFLVPTTLGNIIGGTGIFTLLIYGQVNQELEE

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=263, Percent_Identity=39.1634980988593, Blast_Score=184, Evalue=8e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 31769; Mature: 31637

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTERDKIKVEMEIDPHLSWQEKLAVEEQEKLSPRLVYEIIRRDGVEELSRPTSTLIFS
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCHHHHHHH
GITAGLVMSFSFVFKAVIASYLPIDAVWTDLITNIGYTIGFLIAILGHLQLFTENTITTV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IPLFKPFSLDKLKAVARLWSIVILTNIFGTALSSLFFLTTDLFSPEVDHALDEIAHHVAS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FTAWENFLKGVLSGLLIAALVWMLPSVNNKILLIFMITYLIGLGDFTHVVVGSVEVAYLV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCEEEEEE
WQGQTSLSEYFFQFLVPTTLGNIIGGTGIFTLLIYGQVNQELEE
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKTERDKIKVEMEIDPHLSWQEKLAVEEQEKLSPRLVYEIIRRDGVEELSRPTSTLIFS
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCHHHHHHH
GITAGLVMSFSFVFKAVIASYLPIDAVWTDLITNIGYTIGFLIAILGHLQLFTENTITTV
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IPLFKPFSLDKLKAVARLWSIVILTNIFGTALSSLFFLTTDLFSPEVDHALDEIAHHVAS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
FTAWENFLKGVLSGLLIAALVWMLPSVNNKILLIFMITYLIGLGDFTHVVVGSVEVAYLV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCEEEEEE
WQGQTSLSEYFFQFLVPTTLGNIIGGTGIFTLLIYGQVNQELEE
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]