Click here to switch to the map view.

The map label for this gene is fecI [H]

Identifier: 50084928

GI number: 50084928

Start: 1784139

End: 1784624

Strand: Direct

Name: fecI [H]

Synonym: ACIAD1778

Alternate gene names: 50084928

Gene position: 1784139-1784624 (Clockwise)

Preceding gene: 50084927

Following gene: 50084929

Centisome position: 49.58

GC content: 36.83

Gene sequence:

>486_bases
ATGCTCTATCGGGAACATCATTCCTGGATATATACATGGCTCTATAGAAGGTTAGGTAATTCTGCTGATGCGGCTGATCT
GGCTCAGGATACTTTTATACGTGTGATTACCAGAAAATCACTTCTGGAGATAGAACAACCTCGTGCATATTTAACCACCG
TCGCAAAAAGTCTGATGTTGAACTGGTTCAATCGGAGAAATATAGAGCAGGCGTACTTGGAAGTACTTGCAAACCAACCA
GAATTTGAACATCCTTCACCAGAACAACGTTATTTAATTGTGGAAACATTAATTGAAGTGATTCAATTATTGGATACTTT
ACCAGATCAAATTCGTGATGTTTTTCTGCATGCCCAACTTGAAAATATGAATTATCAACAGATCGCAGACCAGTTTAATC
TTTCCTTAAGTACTGTAAAGCGTCATATTAAAAAGGCATATATACATTGTTTAACAGCGATGCTGGATACAGATTTTTCA
TGTTAA

Upstream 100 bases:

>100_bases
GTAAAGCGTATTGATGCAAATCTAAAATAATATGATAATAATTATCATTTGTTTTGACTTGAGTCATGTTATGACTGTGT
TATCTTCTCAGAACTTGGAG

Downstream 100 bases:

>100_bases
ACCAGAATGAAAGACATCAAATATTAGAAGAAGCTGTAGAGTGGCTAATGCAAATGAAGCAAAAACCACTTAATGAGATT
GAGCTCTTAGAATTTGAACA

Product: alternative RNAP sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLNWFNRRNIEQAYLEVLANQP
EFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFS
C

Sequences:

>Translated_161_residues
MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLNWFNRRNIEQAYLEVLANQP
EFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFS
C
>Mature_161_residues
MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLNWFNRRNIEQAYLEVLANQP
EFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFS
C

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=150, Percent_Identity=44.6666666666667, Blast_Score=146, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19101; Mature: 19101

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL
HHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFSC
HCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL
HHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFSC
HCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]