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The map label for this gene is exbD [H]

Identifier: 50084752

GI number: 50084752

Start: 1582686

End: 1583093

Strand: Direct

Name: exbD [H]

Synonym: ACIAD1590

Alternate gene names: 50084752

Gene position: 1582686-1583093 (Clockwise)

Preceding gene: 50084751

Following gene: 50084753

Centisome position: 43.98

GC content: 43.14

Gene sequence:

>408_bases
ATGGCAATTTCAACATCAGAACAAGATGATGTCGTCAGCGAGATCAATATTACCCCTTTAGTAGACGTGATGTTGGTTCT
GTTGATTGTATTTATCGTCACGGCGCCCTTACTCACCAATACTGTTAAGGTAAACTTACCCAAAGCGGCACCAACACAGG
TGACAGATCAAACCAAGGCAGTAGTCATTAGTGTTAATCCAAAAGGAGAAATTTATCTGGATAAAGATAAAGTCACTCTT
GAACACTTCGAACAGGCCATTCAAACGCGTAAGGCAGCCAATCCTAAACTGGCTCTGAACCTGAATGCAGATGAGACGGT
TCCTTATGGTACGGTTGCCAAGTTACTGGCCAGCATAGAACGGGTAGGCGTTGATAAACTATCAGTCATTACGTCGCCTA
AGTCTTAA

Upstream 100 bases:

>100_bases
CAGGTTTCCAGCTTAAGACAGTCAAGGCAAAAACAACAAATACGAGCACTCCAGCCAGCGAGTTAAGCCATACCCACAAT
AAAGAAAAGGTATATGCATA

Downstream 100 bases:

>100_bases
GTTCTATCAAAATAAACAAGACGAAAGAAAATCAAGATCCAAATTTGAGATCTTGATTTTTATATAATTGTTTAATCTAA
ATTTATATTAAACTTGAATT

Product: biopolymer transport protein (ExbD-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MAISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQVTDQTKAVVISVNPKGEIYLDKDKVTL
EHFEQAIQTRKAANPKLALNLNADETVPYGTVAKLLASIERVGVDKLSVITSPKS

Sequences:

>Translated_135_residues
MAISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQVTDQTKAVVISVNPKGEIYLDKDKVTL
EHFEQAIQTRKAANPKLALNLNADETVPYGTVAKLLASIERVGVDKLSVITSPKS
>Mature_134_residues
AISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQVTDQTKAVVISVNPKGEIYLDKDKVTLE
HFEQAIQTRKAANPKLALNLNADETVPYGTVAKLLASIERVGVDKLSVITSPKS

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=133, Percent_Identity=35.3383458646617, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14549; Mature: 14418

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQVTDQTKA
CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEE
VVISVNPKGEIYLDKDKVTLEHFEQAIQTRKAANPKLALNLNADETVPYGTVAKLLASIE
EEEEECCCCCEEECCCCEEHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH
RVGVDKLSVITSPKS
HCCCCCEEEEECCCC
>Mature Secondary Structure 
AISTSEQDDVVSEINITPLVDVMLVLLIVFIVTAPLLTNTVKVNLPKAAPTQVTDQTKA
CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEE
VVISVNPKGEIYLDKDKVTLEHFEQAIQTRKAANPKLALNLNADETVPYGTVAKLLASIE
EEEEECCCCCEEECCCCEEHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH
RVGVDKLSVITSPKS
HCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10689178; 10984043 [H]