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The map label for this gene is sodB [H]

Identifier: 50084526

GI number: 50084526

Start: 1340970

End: 1341596

Strand: Reverse

Name: sodB [H]

Synonym: ACIAD1346

Alternate gene names: 50084526

Gene position: 1341596-1340970 (Counterclockwise)

Preceding gene: 50084527

Following gene: 50084522

Centisome position: 37.28

GC content: 40.67

Gene sequence:

>627_bases
ATGACAACCATTACTTTACCTGCATTACCTTATGCTTACGATGCGCTTGAGCCACACATTTCTAAAGAAACTTTAGAATA
TCATCACGATAAGCATCATCAAACTTATGTGACTAACCTCAACAACCTGATCAAAGGTACAGAGCTTGAAGGTCAGGAAC
TTGAAGACATCATTAAAGCAAGTGCAGGTGATTCATCTAAAGCAGGTATTTTCAACAATGCTGCACAAGTATGGAACCAC
ACGTTCTACTGGAACTCGATTGCTCCAAACGGTGGTGGTAAACCAACTGGCGCACTTGCTGCAAAAATTGATGAAGCGTT
TGGTTCATATGAAAAATTTGCAGAAGAATTCACCACTGCTGCAACCACTCAATTTGGTTCAGGCTGGGCTTGGTTAGTCG
CTGACGAAATCAATGGTAAACTTTCAATTACTAAAACGTCTAACGCAGATACTCCACTTGCACATGGTCAAGTTGCTGTA
TTAACGATTGATGTATGGGAACATGCTTACTATATCGATTACCGTAATGCACGTCCTAAATACATTTCGACTTTCCTTGA
AAGCCTAGTCAACTGGGATTATGCGAATGCTAAACTTGCAGGCCAACCTGCTGGTGTAGAAAAATAA

Upstream 100 bases:

>100_bases
CACTAAATCAAGGGACTGTGAGCTTTTTGCTCAAAAAATACTTTATTAAGAAAAGTATCAGCAGTTCCTTAAATACCCAG
CTAACGCAAGGAAATTAGAC

Downstream 100 bases:

>100_bases
TTTTATTATTTTTCAAAAAGACCACTCTTTATTGAGTGGTTTTTTTACATCAGAAAAACAAAAGATGGATAATAAAACAC
CACAACCCACTGTTTTGTTT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTTITLPALPYAYDALEPHISKETLEYHHDKHHQTYVTNLNNLIKGTELEGQELEDIIKASAGDSSKAGIFNNAAQVWNH
TFYWNSIAPNGGGKPTGALAAKIDEAFGSYEKFAEEFTTAATTQFGSGWAWLVADEINGKLSITKTSNADTPLAHGQVAV
LTIDVWEHAYYIDYRNARPKYISTFLESLVNWDYANAKLAGQPAGVEK

Sequences:

>Translated_208_residues
MTTITLPALPYAYDALEPHISKETLEYHHDKHHQTYVTNLNNLIKGTELEGQELEDIIKASAGDSSKAGIFNNAAQVWNH
TFYWNSIAPNGGGKPTGALAAKIDEAFGSYEKFAEEFTTAATTQFGSGWAWLVADEINGKLSITKTSNADTPLAHGQVAV
LTIDVWEHAYYIDYRNARPKYISTFLESLVNWDYANAKLAGQPAGVEK
>Mature_207_residues
TTITLPALPYAYDALEPHISKETLEYHHDKHHQTYVTNLNNLIKGTELEGQELEDIIKASAGDSSKAGIFNNAAQVWNHT
FYWNSIAPNGGGKPTGALAAKIDEAFGSYEKFAEEFTTAATTQFGSGWAWLVADEINGKLSITKTSNADTPLAHGQVAVL
TIDVWEHAYYIDYRNARPKYISTFLESLVNWDYANAKLAGQPAGVEK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=191, Percent_Identity=41.3612565445026, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI67782305, Length=191, Percent_Identity=41.3612565445026, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI67782309, Length=191, Percent_Identity=35.6020942408377, Blast_Score=109, Evalue=1e-24,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=62.1212121212121, Blast_Score=251, Evalue=2e-68,
Organism=Escherichia coli, GI1790342, Length=210, Percent_Identity=42.8571428571429, Blast_Score=159, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17569479, Length=202, Percent_Identity=36.6336633663366, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=35.3233830845771, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=212, Percent_Identity=37.7358490566038, Blast_Score=124, Evalue=7e-30,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=40.1015228426396, Blast_Score=139, Evalue=1e-33,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22912; Mature: 22780

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTITLPALPYAYDALEPHISKETLEYHHDKHHQTYVTNLNNLIKGTELEGQELEDIIKA
CCEEECCCCCHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
SAGDSSKAGIFNNAAQVWNHTFYWNSIAPNGGGKPTGALAAKIDEAFGSYEKFAEEFTTA
CCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ATTQFGSGWAWLVADEINGKLSITKTSNADTPLAHGQVAVLTIDVWEHAYYIDYRNARPK
HHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCHH
YISTFLESLVNWDYANAKLAGQPAGVEK
HHHHHHHHHHCCCCCCCEECCCCCCCCC
>Mature Secondary Structure 
TTITLPALPYAYDALEPHISKETLEYHHDKHHQTYVTNLNNLIKGTELEGQELEDIIKA
CEEECCCCCHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
SAGDSSKAGIFNNAAQVWNHTFYWNSIAPNGGGKPTGALAAKIDEAFGSYEKFAEEFTTA
CCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ATTQFGSGWAWLVADEINGKLSITKTSNADTPLAHGQVAVLTIDVWEHAYYIDYRNARPK
HHHCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEECCEEEEEEECCCCHH
YISTFLESLVNWDYANAKLAGQPAGVEK
HHHHHHHHHHCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2501651 [H]