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The map label for this gene is nlpD [C]

Identifier: 50084416

GI number: 50084416

Start: 1229817

End: 1230650

Strand: Direct

Name: nlpD [C]

Synonym: ACIAD1229

Alternate gene names: 50084416

Gene position: 1229817-1230650 (Clockwise)

Preceding gene: 50084415

Following gene: 50084417

Centisome position: 34.17

GC content: 42.21

Gene sequence:

>834_bases
ATGCAATTGCTTCGACAACATCAGGAATTTACTGTTTTCCCCTTTACATTCATCAAAACAATAATGTTGTCTGCTGCGGT
TGTTGGTACGCTTGCAATCACAGGATGTGCTTCAAAACCCCAGATCAATCAACCTGTCCGTTATACAAATGCACCTGATT
ATTATACGGTTCGGGCTGGAGATACCTTAAGCGGGATTGCTGCACGTTATGGGCTAAATTATCTCAATGTTGCAGAACTC
AATGACATTGCGCCGCCGTATCGTATTTATGTCAACCAATCATTGCGTTTAAAAGGTTCCAGTAATCGTCGAACTGTAGC
GACTCAACCTATGGCACAAACGGCACCAATTCAACGCCAAACCATTAATTTACCTACAACAACTGCTCAGACATCTCCAT
CACGATCAGTACAAAATTTACCGCCAGCTACAACGACAGTACCTGTTGTACCTAAAGCAGCTTCAAACTTACGTTGGGTG
AAGCCATCAACGGGCCCTGTAATTCAGAATTTTAATTTGGCAAGTAATGTCAAAGGAATTCGTTATGGTGGCAATGTGGG
TGATCCTGTTTTAGCTGCTGCAAATGGTCAGGTGGTTTATGCCGCAGATGGTTTAAAAGAATACGGCAATTTAGTTTTAA
TTAAGCATGTCGATGGCTATATCACAGCTTATGCACACAACAGTAAAATGCTGGTGAAGAGCGGAGATAACGTCACTGCA
GGCCAAAAAATTGCCGAAATGGGCTCATCAGGTGCTGACCGTATCATGCTTGAATTCCAGGTTCGTTTAGATGGTAAACC
GATTAATCCTGCCAATATTATCCCAATTAACTAA

Upstream 100 bases:

>100_bases
AACTTTGTGAAAAAAAGAATGAGAAACTCGTTTATTCATTCTTTTTTGGTAATCTTAGTGCAAATATTTGTTCGATTTTC
TTGATCCGAGAGGGAGATAA

Downstream 100 bases:

>100_bases
TAGGAAATATGAATTAAATAATGCAAAACATAGATTTCTCCGTATAATACAACGAGTTGCTTTTATCATATTTTGATAGG
GAGCATCTCATAAGTTCAGA

Product: lipoprotein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MQLLRQHQEFTVFPFTFIKTIMLSAAVVGTLAITGCASKPQINQPVRYTNAPDYYTVRAGDTLSGIAARYGLNYLNVAEL
NDIAPPYRIYVNQSLRLKGSSNRRTVATQPMAQTAPIQRQTINLPTTTAQTSPSRSVQNLPPATTTVPVVPKAASNLRWV
KPSTGPVIQNFNLASNVKGIRYGGNVGDPVLAAANGQVVYAADGLKEYGNLVLIKHVDGYITAYAHNSKMLVKSGDNVTA
GQKIAEMGSSGADRIMLEFQVRLDGKPINPANIIPIN

Sequences:

>Translated_277_residues
MQLLRQHQEFTVFPFTFIKTIMLSAAVVGTLAITGCASKPQINQPVRYTNAPDYYTVRAGDTLSGIAARYGLNYLNVAEL
NDIAPPYRIYVNQSLRLKGSSNRRTVATQPMAQTAPIQRQTINLPTTTAQTSPSRSVQNLPPATTTVPVVPKAASNLRWV
KPSTGPVIQNFNLASNVKGIRYGGNVGDPVLAAANGQVVYAADGLKEYGNLVLIKHVDGYITAYAHNSKMLVKSGDNVTA
GQKIAEMGSSGADRIMLEFQVRLDGKPINPANIIPIN
>Mature_277_residues
MQLLRQHQEFTVFPFTFIKTIMLSAAVVGTLAITGCASKPQINQPVRYTNAPDYYTVRAGDTLSGIAARYGLNYLNVAEL
NDIAPPYRIYVNQSLRLKGSSNRRTVATQPMAQTAPIQRQTINLPTTTAQTSPSRSVQNLPPATTTVPVVPKAASNLRWV
KPSTGPVIQNFNLASNVKGIRYGGNVGDPVLAAANGQVVYAADGLKEYGNLVLIKHVDGYITAYAHNSKMLVKSGDNVTA
GQKIAEMGSSGADRIMLEFQVRLDGKPINPANIIPIN

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=247, Percent_Identity=38.4615384615385, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1789099, Length=255, Percent_Identity=33.7254901960784, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87082297, Length=114, Percent_Identity=37.719298245614, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 29868; Mature: 29868

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLLRQHQEFTVFPFTFIKTIMLSAAVVGTLAITGCASKPQINQPVRYTNAPDYYTVRAG
CCHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEECCCCCEEEEECC
DTLSGIAARYGLNYLNVAELNDIAPPYRIYVNQSLRLKGSSNRRTVATQPMAQTAPIQRQ
CCHHHHHHHHCCCEEEEHHHHCCCCCEEEEECCEEEEECCCCCCEEEECCCHHCCCCCEE
TINLPTTTAQTSPSRSVQNLPPATTTVPVVPKAASNLRWVKPSTGPVIQNFNLASNVKGI
EECCCCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCEEECCCCCCEEECCCHHHCCCEE
RYGGNVGDPVLAAANGQVVYAADGLKEYGNLVLIKHVDGYITAYAHNSKMLVKSGDNVTA
EECCCCCCCEEEECCCCEEEEECCHHHHCCEEEEEECCCEEEEEEECCEEEEECCCCCCH
GQKIAEMGSSGADRIMLEFQVRLDGKPINPANIIPIN
HHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEEECC
>Mature Secondary Structure
MQLLRQHQEFTVFPFTFIKTIMLSAAVVGTLAITGCASKPQINQPVRYTNAPDYYTVRAG
CCHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEECCCCCEEEEECC
DTLSGIAARYGLNYLNVAELNDIAPPYRIYVNQSLRLKGSSNRRTVATQPMAQTAPIQRQ
CCHHHHHHHHCCCEEEEHHHHCCCCCEEEEECCEEEEECCCCCCEEEECCCHHCCCCCEE
TINLPTTTAQTSPSRSVQNLPPATTTVPVVPKAASNLRWVKPSTGPVIQNFNLASNVKGI
EECCCCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCEEECCCCCCEEECCCHHHCCCEE
RYGGNVGDPVLAAANGQVVYAADGLKEYGNLVLIKHVDGYITAYAHNSKMLVKSGDNVTA
EECCCCCCCEEEECCCCEEEEECCHHHHCCEEEEEECCCEEEEEEECCEEEEECCCCCCH
GQKIAEMGSSGADRIMLEFQVRLDGKPINPANIIPIN
HHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]